RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 LDLRP01130 860 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 FUCA1P04066 466 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 C8BP07358 591 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 HOXB2P14652 356 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 ENGP17813 658 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 GRIA2P42262 883 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 RXRGP48443 463 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 DGKEP52429 567 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 TRAP1Q12931 704 aaKnown RBP10.36□□□□□ -0.75
NEDD9-201ENST00000379433 IRF4Q15306 451 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 VTCN1Q7Z7D3 282 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 OR9A1PQ8NGU1 263 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 LILRB4Q8NHJ6 448 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 DOK4Q8TEW6 326 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 HMGB4Q8WW32 186 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 PRDM8Q9NQV8 689 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 CCM2LQ9NUG4 571 aaPredicted RBP10.36□□□□□ -0.75
NEDD9-201ENST00000379433 AASSQ9UDR5 926 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 MAP4K5Q9Y4K4 846 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 CELSR3Q9NYQ7 3312 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 POM121BA6NF01 834 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 EVPLLA8MZ36 301 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 CXCR6O00574 342 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 MAGEB3O15480 346 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 PCDH7O60245 1069 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 CST1P01037 141 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 IL6P05231 212 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 MPC1LP0DKB6 136 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 HOXB3P14651 431 aaPredicted RBP10.36□□□□□ -0.75
NEDD9-201ENST00000379433 PXNP49023 591 aaPredicted RBP10.36□□□□□ -0.75
NEDD9-201ENST00000379433 POU3F4P49335 361 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 TAS2R50P59544 299 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 RPS26P62854 115 aaKnown RBP10.36□□□□□ -0.75
NEDD9-201ENST00000379433 BNIP2Q12982 314 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 FGL2Q14314 439 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 AASDHQ4L235 1098 aaPredicted RBP10.36□□□□□ -0.75
NEDD9-201ENST00000379433 FAM46CQ5VWP2 391 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 MED27Q6P2C8 311 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 FAM122CQ6P4D5 195 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 MZT2AQ6P582 158 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 ERMP1Q7Z2K6 904 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 C10orf53Q8N6V4 93 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 TSACCQ96A04 125 aaPredicted RBP10.36□□□□□ -0.75
NEDD9-201ENST00000379433 FBXL8Q96CD0 374 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 F2RL3Q96RI0 385 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 CLMPQ9H6B4 373 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 EHD3Q9NZN3 535 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 ERVK-11Q9UQG0 969 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 ZDBF2Q9HCK1 2354 aa10.36□□□□□ -0.75
NEDD9-201ENST00000379433 RRP8O43159 456 aaKnown RBP10.35□□□□□ -0.75
NEDD9-201ENST00000379433 B4GAT1O43505 415 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 AP2A2O94973 939 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 EGFP01133 1207 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 ANXA6P08133 673 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 PIM1P11309 404 aaPredicted RBP10.35□□□□□ -0.75
NEDD9-201ENST00000379433 HSD17B1P14061 328 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 NKX2-5P52952 324 aaPredicted RBP10.35□□□□□ -0.75
NEDD9-201ENST00000379433 DCDC1P59894 354 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 C2orf80Q0P641 193 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 EIF4HQ15056 248 aaKnown RBP10.35□□□□□ -0.75
NEDD9-201ENST00000379433 SMU1Q2TAY7 513 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 UAP1L1Q3KQV9 507 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 FOXB2Q5VYV0 432 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 C8orf82Q6P1X6 216 aaPredicted RBP10.35□□□□□ -0.75
NEDD9-201ENST00000379433 NUDT18Q6ZVK8 323 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 TCAIMQ8N3R3 496 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 TMEM132CQ8N3T6 1108 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 TMIEQ8NEW7 156 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 TRAPPC9Q96Q05 1148 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 USB1Q9BQ65 265 aaKnown RBP10.35□□□□□ -0.75
NEDD9-201ENST00000379433 C9orf16Q9BUW7 83 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 SMOXQ9NWM0 555 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 THAP10Q9P2Z0 257 aaPredicted RBP10.35□□□□□ -0.75
NEDD9-201ENST00000379433 ALPK3Q96L96 1907 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 KIF26AQ9ULI4 1882 aaPredicted RBP10.35□□□□□ -0.75
NEDD9-201ENST00000379433 SLC9B1P1A6NJY1 282 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 GABRR3A8MPY1 467 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 CLIC1O00299 241 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 OR1F1O43749 312 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 PLOD3O60568 738 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 CLPTM1O96005 669 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 CLK3P49761 638 aaKnown RBP10.35□□□□□ -0.75
NEDD9-201ENST00000379433 PPP2R2BQ00005 443 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 NKG7Q16617 165 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 UGT8Q16880 541 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.35□□□□□ -0.75
NEDD9-201ENST00000379433 CPTPQ5TA50 214 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 AGBL4Q5VU57 503 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 SHEQ5VZ18 495 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 RAB12Q6IQ22 244 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 LRRTM4Q86VH4 590 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 TRPV3Q8NET8 790 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 CCL4L1Q8NHW4 92 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 FCRL4Q96PJ5 515 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 RMND5AQ9H871 391 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 HPF1Q9NWY4 346 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 PCDHGA11Q9Y5H2 935 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 PIPSLA2A3N6 862 aa10.35□□□□□ -0.75
NEDD9-201ENST00000379433 PRKRAO75569 313 aaKnown RBP10.35□□□□□ -0.75
NEDD9-201ENST00000379433 SERPINB7O75635 380 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms