RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 EXTL1Q92935 676 aa8.46□□□□□ -1.05
LIG3-202ENST00000378526 RNF157Q96PX1 679 aa8.46□□□□□ -1.05
LIG3-202ENST00000378526 LDAHQ9H6V9 325 aa8.46□□□□□ -1.05
LIG3-202ENST00000378526 KLHL13Q9P2N7 655 aa8.46□□□□□ -1.05
LIG3-202ENST00000378526 RP1P56715 2156 aa8.46□□□□□ -1.05
LIG3-202ENST00000378526 FAM86B1E9PN63 330 aa8.46□□□□□ -1.05
LIG3-202ENST00000378526 CLDN4O14493 209 aa8.46□□□□□ -1.05
LIG3-202ENST00000378526 OXTRP30559 389 aa8.46□□□□□ -1.05
LIG3-202ENST00000378526 RAB33AQ14088 237 aa8.46□□□□□ -1.05
LIG3-202ENST00000378526 GRM3Q14832 879 aa8.46□□□□□ -1.05
LIG3-202ENST00000378526 B3GNT9Q6UX72 402 aa8.46□□□□□ -1.05
LIG3-202ENST00000378526 TMCO2Q7Z6W1 182 aaPredicted RBP8.46□□□□□ -1.05
LIG3-202ENST00000378526 CMTM1Q8IZ96 169 aa8.46□□□□□ -1.05
LIG3-202ENST00000378526 FAM86B1Q8N7N1 296 aa8.46□□□□□ -1.05
LIG3-202ENST00000378526 BLNKQ8WV28 456 aa8.46□□□□□ -1.05
LIG3-202ENST00000378526 NT5C3BQ969T7 300 aa8.46□□□□□ -1.05
LIG3-202ENST00000378526 FAM46AQ96IP4 442 aaKnown RBP8.46□□□□□ -1.05
LIG3-202ENST00000378526 NKX1-2Q9UD57 310 aaPredicted RBP8.46□□□□□ -1.05
LIG3-202ENST00000378526 CACNG2Q9Y698 323 aa8.46□□□□□ -1.05
LIG3-202ENST00000378526 CNTNAP2Q9UHC6 1331 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 METP08581 1390 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 PPP5D1E7EU14 171 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 CYB561D2O14569 222 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 HOXA2O43364 376 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 UPP2O95045 317 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 MT-ND4LP03901 98 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 MGST1P10620 155 aaKnown RBP8.46□□□□□ -1.06
LIG3-202ENST00000378526 UGT2B7P16662 529 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 S1PR1P21453 382 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 CD86P42081 329 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 CRYZQ08257 329 aaKnown RBP8.46□□□□□ -1.06
LIG3-202ENST00000378526 TMEM236Q5W0B7 351 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 NAA40Q86UY6 237 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 ZSWIM9Q86XI8 627 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 OR5H2Q8NGV7 314 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 CMTM3Q96MX0 182 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 IL4I1Q96RQ9 567 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 SEC22CQ9BRL7 303 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 ORAI3Q9BRQ5 295 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 EFCAB11Q9BUY7 163 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 COA1Q9GZY4 146 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 RHBGQ9H310 441 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 HRH4Q9H3N8 390 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 MED16Q9Y2X0 877 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 V9GYS6 101 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 MYO9BQ13459 2157 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 CXCR3P49682 368 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 C11orf91Q3C1V1 193 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 MPZL3Q6UWV2 235 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 OR6J1Q8NGC5 347 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 OR4K17Q8NGC6 315 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 SNX18Q96RF0 628 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 NAALAD2Q9Y3Q0 740 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.46□□□□□ -1.06
LIG3-202ENST00000378526 VSTM5A8MXK1 200 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 ARVCFO00192 962 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 SERPINA12Q8IW75 414 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 OSCARQ8IYS5 282 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 C15orf54Q8N8G6 183 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 OR10Z1Q8NGY1 313 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 UPRTQ96BW1 309 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 FCRL1Q96LA6 429 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 C17orf62Q9BQA9 187 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 POPDC2Q9HBU9 364 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 B3GAT2Q9NPZ5 323 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 DPP7Q9UHL4 492 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 PCDHGA9Q9Y5G4 932 aaKnown RBP8.46□□□□□ -1.06
LIG3-202ENST00000378526 SAMD9Q5K651 1589 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 GPR137BO60478 399 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 STK16O75716 305 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 ADH1CP00326 375 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 SLC6A6P31641 620 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 IL6STP40189 918 aaPredicted RBP8.46□□□□□ -1.06
LIG3-202ENST00000378526 PTH2RP49190 550 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 EPHB3P54753 998 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 MINDY4Q4G0A6 757 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 STEAP4Q687X5 459 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 EFCAB12Q6NXP0 572 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 B3GNT7Q8NFL0 401 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 OR7D2Q96RA2 312 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 WDR55Q9H6Y2 383 aaPredicted RBP8.46□□□□□ -1.06
LIG3-202ENST00000378526 NDRG3Q9UGV2 375 aa8.46□□□□□ -1.06
LIG3-202ENST00000378526 ZNF726A6NNF4 738 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 CHEK1O14757 476 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 FMO6PO60774 539 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 EPOP01588 193 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 RPS3AP61247 264 aaKnown RBP8.45□□□□□ -1.06
LIG3-202ENST00000378526 LCN6P62502 163 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 RAB1AP62820 205 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 SCAPQ12770 1279 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 RETREG3Q86VR2 466 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 OR6Q1Q8NGQ2 317 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 WRAP53Q9BUR4 548 aaKnown RBP8.45□□□□□ -1.06
LIG3-202ENST00000378526 SPG21Q9NZD8 308 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 NLKQ9UBE8 527 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 KNL1Q8NG31 2342 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 CAPN5O15484 640 aaPredicted RBP8.45□□□□□ -1.06
LIG3-202ENST00000378526 RNF13O43567 381 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 RAC2P15153 192 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 OR1G1P47890 313 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms