RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 KBTBD2Q8IY47 623 aa14.88□□□□□ -0.03
CLN3-201ENST00000333496 L3MBTL4Q8NA19 623 aa14.88□□□□□ -0.03
CLN3-201ENST00000333496 HUS1BQ8NHY5 278 aa14.88□□□□□ -0.03
CLN3-201ENST00000333496 ACMSDQ8TDX5 336 aa14.88□□□□□ -0.03
CLN3-201ENST00000333496 AGAP4Q96P64 663 aa14.88□□□□□ -0.03
CLN3-201ENST00000333496 CDK15Q96Q40 435 aa14.88□□□□□ -0.03
CLN3-201ENST00000333496 TUBB6Q9BUF5 446 aa14.88□□□□□ -0.03
CLN3-201ENST00000333496 NPLQ9BXD5 320 aaPredicted RBP14.88□□□□□ -0.03
CLN3-201ENST00000333496 TSC22D4Q9Y3Q8 395 aa14.88□□□□□ -0.03
CLN3-201ENST00000333496 CSAG2Q9Y5P2 127 aa14.88□□□□□ -0.03
CLN3-201ENST00000333496 A0A1B0GTL3 188 aa14.87□□□□□ -0.03
CLN3-201ENST00000333496 H0YIV9 168 aa14.87□□□□□ -0.03
CLN3-201ENST00000333496 RTCAO00442 366 aaKnown RBP14.87□□□□□ -0.03
CLN3-201ENST00000333496 SORBS2O94875 1100 aaKnown RBP14.87□□□□□ -0.03
CLN3-201ENST00000333496 SERPINA7P05543 415 aa14.87□□□□□ -0.03
CLN3-201ENST00000333496 RPS17P08708 135 aaKnown RBP14.87□□□□□ -0.03
CLN3-201ENST00000333496 ITGAMP11215 1152 aa14.87□□□□□ -0.03
CLN3-201ENST00000333496 JAK1P23458 1154 aa14.87□□□□□ -0.03
CLN3-201ENST00000333496 CERS1P27544 350 aa14.87□□□□□ -0.03
CLN3-201ENST00000333496 HPDP32754 393 aaPredicted RBP14.87□□□□□ -0.03
CLN3-201ENST00000333496 PIK3CGP48736 1102 aa14.87□□□□□ -0.03
CLN3-201ENST00000333496 GYS2P54840 703 aa14.87□□□□□ -0.03
CLN3-201ENST00000333496 MLLT10P55197 1068 aa14.87□□□□□ -0.03
CLN3-201ENST00000333496 TRAF3Q13114 568 aa14.87□□□□□ -0.03
CLN3-201ENST00000333496 CPSF6Q16630 551 aaKnown RBP eCLIP14.87□□□□□ -0.03
CLN3-201ENST00000333496 SFT2D3Q587I9 215 aa14.87□□□□□ -0.03
CLN3-201ENST00000333496 QSOX2Q6ZRP7 698 aa14.87□□□□□ -0.03
CLN3-201ENST00000333496 LCA5Q86VQ0 697 aa14.87□□□□□ -0.03
CLN3-201ENST00000333496 TDRPQ86YL5 185 aa14.87□□□□□ -0.03
CLN3-201ENST00000333496 IQCKQ8N0W5 287 aa14.87□□□□□ -0.03
CLN3-201ENST00000333496 TMEM52Q8NDY8 209 aa14.87□□□□□ -0.03
CLN3-201ENST00000333496 WDR20Q8TBZ3 569 aa14.87□□□□□ -0.03
CLN3-201ENST00000333496 BRIX1Q8TDN6 353 aaKnown RBP14.87□□□□□ -0.03
CLN3-201ENST00000333496 EPS8L3Q8TE67 593 aaKnown RBP14.87□□□□□ -0.03
CLN3-201ENST00000333496 PTCHD1Q96NR3 888 aa14.87□□□□□ -0.03
CLN3-201ENST00000333496 SERINC2Q96SA4 455 aa14.87□□□□□ -0.03
CLN3-201ENST00000333496 MTERF1Q99551 399 aaKnown RBP14.87□□□□□ -0.03
CLN3-201ENST00000333496 NTMT1Q9BV86 223 aa14.87□□□□□ -0.03
CLN3-201ENST00000333496 C1QTNF3Q9BXJ4 246 aa14.87□□□□□ -0.03
CLN3-201ENST00000333496 OR51B5Q9H339 312 aa14.87□□□□□ -0.03
CLN3-201ENST00000333496 NECTIN3Q9NQS3 549 aa14.87□□□□□ -0.03
CLN3-201ENST00000333496 LUZP4Q9P127 313 aa14.87□□□□□ -0.03
CLN3-201ENST00000333496 C19orf25Q9UFG5 118 aaPredicted RBP14.87□□□□□ -0.03
CLN3-201ENST00000333496 PCDHGA11Q9Y5H2 935 aa14.87□□□□□ -0.03
CLN3-201ENST00000333496 CLDN16Q9Y5I7 305 aa14.87□□□□□ -0.03
CLN3-201ENST00000333496 TENM4Q6N022 2769 aa14.86□□□□□ -0.03
CLN3-201ENST00000333496 PRRC2CQ9Y520 2896 aaKnown RBP14.86□□□□□ -0.03
CLN3-201ENST00000333496 IGKV3D-11A0A0A0MRZ8 115 aa14.86□□□□□ -0.03
CLN3-201ENST00000333496 PPP6CO00743 305 aa14.86□□□□□ -0.03
CLN3-201ENST00000333496 B3GALT2O43825 422 aa14.86□□□□□ -0.03
CLN3-201ENST00000333496 PRMT3O60678 531 aa14.86□□□□□ -0.03
CLN3-201ENST00000333496 CLDN9O95484 217 aa14.86□□□□□ -0.03
CLN3-201ENST00000333496 MAOAP21397 527 aa14.86□□□□□ -0.03
CLN3-201ENST00000333496 PIK3CBP42338 1070 aa14.86□□□□□ -0.03
CLN3-201ENST00000333496 HNRNPFP52597 415 aaKnown RBP14.86□□□□□ -0.03
CLN3-201ENST00000333496 MTTPP55157 894 aa14.86□□□□□ -0.03
CLN3-201ENST00000333496 HNRNPH2P55795 449 aaKnown RBP14.86□□□□□ -0.03
CLN3-201ENST00000333496 DDX39BQ13838 428 aaKnown RBP14.86□□□□□ -0.03
CLN3-201ENST00000333496 PLEKHN1Q494U1 663 aaPredicted RBP14.86□□□□□ -0.03
CLN3-201ENST00000333496 DEPDC1Q5TB30 811 aa14.86□□□□□ -0.03
CLN3-201ENST00000333496 PLAG1Q6DJT9 500 aa14.86□□□□□ -0.03
CLN3-201ENST00000333496 RIPOR1Q6ZS17 1223 aa14.86□□□□□ -0.03
CLN3-201ENST00000333496 SIRT6Q8N6T7 355 aa14.86□□□□□ -0.03
CLN3-201ENST00000333496 FAM76AQ8TAV0 307 aa14.86□□□□□ -0.03
CLN3-201ENST00000333496 PNPLA2Q96AD5 504 aa14.86□□□□□ -0.03
CLN3-201ENST00000333496 CMTM7Q96FZ5 175 aa14.86□□□□□ -0.03
CLN3-201ENST00000333496 ZIM3Q96PE6 472 aa14.86□□□□□ -0.03
CLN3-201ENST00000333496 KCNC2Q96PR1 638 aa14.86□□□□□ -0.03
CLN3-201ENST00000333496 SH3GL2Q99962 352 aa14.86□□□□□ -0.03
CLN3-201ENST00000333496 DMRT3Q9NQL9 472 aa14.86□□□□□ -0.03
CLN3-201ENST00000333496 KCMF1Q9P0J7 381 aa14.86□□□□□ -0.03
CLN3-201ENST00000333496 ADGRE2Q9UHX3 823 aa14.86□□□□□ -0.03
CLN3-201ENST00000333496 DAPP1Q9UN19 280 aa14.86□□□□□ -0.03
CLN3-201ENST00000333496 A0A088AWK7 358 aa14.85□□□□□ -0.03
CLN3-201ENST00000333496 SMIM23A6NLE4 172 aa14.85□□□□□ -0.03
CLN3-201ENST00000333496 PSMD12O00232 456 aaPredicted RBP14.85□□□□□ -0.03
CLN3-201ENST00000333496 SAP18O00422 153 aaKnown RBP14.85□□□□□ -0.03
CLN3-201ENST00000333496 DLX3O60479 287 aa14.85□□□□□ -0.03
CLN3-201ENST00000333496 ZNF10P21506 573 aaPredicted RBP14.85□□□□□ -0.03
CLN3-201ENST00000333496 ATP5A1P25705 553 aaKnown RBP14.85□□□□□ -0.03
CLN3-201ENST00000333496 SERPINB1P30740 379 aa14.85□□□□□ -0.03
CLN3-201ENST00000333496 SOX11P35716 441 aa14.85□□□□□ -0.03
CLN3-201ENST00000333496 CCNG1P51959 295 aa14.85□□□□□ -0.03
CLN3-201ENST00000333496 CDH13P55290 713 aa14.85□□□□□ -0.03
CLN3-201ENST00000333496 LIM2P55344 173 aa14.85□□□□□ -0.03
CLN3-201ENST00000333496 RAB38P57729 211 aa14.85□□□□□ -0.03
CLN3-201ENST00000333496 RPS13P62277 151 aaKnown RBP14.85□□□□□ -0.03
CLN3-201ENST00000333496 RASA2Q15283 850 aa14.85□□□□□ -0.03
CLN3-201ENST00000333496 IGFBP7Q16270 282 aa14.85□□□□□ -0.03
CLN3-201ENST00000333496 TMEM35AQ53FP2 167 aa14.85□□□□□ -0.03
CLN3-201ENST00000333496 IRAK1BP1Q5VVH5 260 aa14.85□□□□□ -0.03
CLN3-201ENST00000333496 KHDRBS2Q5VWX1 349 aaKnown RBP14.85□□□□□ -0.03
CLN3-201ENST00000333496 FAM219BQ5XKK7 198 aa14.85□□□□□ -0.03
CLN3-201ENST00000333496 PAPD4Q6PIY7 484 aaKnown RBP14.85□□□□□ -0.03
CLN3-201ENST00000333496 ISLR2Q6UXK2 745 aa14.85□□□□□ -0.03
CLN3-201ENST00000333496 LINC00696Q6ZRV3 163 aa14.85□□□□□ -0.03
CLN3-201ENST00000333496 Q6ZS92 163 aa14.85□□□□□ -0.03
CLN3-201ENST00000333496 CHSY3Q70JA7 882 aa14.85□□□□□ -0.03
CLN3-201ENST00000333496 SRFBP1Q8NEF9 429 aaKnown RBP14.85□□□□□ -0.03
CLN3-201ENST00000333496 OR2W6PQ8NHA6 318 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms