RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 CCDC63Q8NA47 563 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 TEX19Q8NA77 164 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 ARMC2Q8NEN0 867 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 MYRIPQ8NFW9 859 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 RDH11Q8TC12 318 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 ADAMTS18Q8TE60 1221 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 PTCHD1Q96NR3 888 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 CDK15Q96Q40 435 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 SMAD5Q99717 465 aaKnown RBP13.2□□□□□ -0.3
LIMS1-201ENST00000332345 TUBB6Q9BUF5 446 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 NUDT9Q9BW91 350 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 LHPPQ9H008 270 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 IQCGQ9H095 443 aaKnown RBP13.2□□□□□ -0.3
LIMS1-201ENST00000332345 ZNF160Q9HCG1 818 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 DMRT3Q9NQL9 472 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 LANCL2Q9NS86 450 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 LGALS13Q9UHV8 139 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 MRPS33Q9Y291 106 aaKnown RBP13.2□□□□□ -0.3
LIMS1-201ENST00000332345 STK38LQ9Y2H1 464 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 TLN1Q9Y490 2541 aaKnown RBP13.2□□□□□ -0.3
LIMS1-201ENST00000332345 PCSK5Q92824 1860 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 TNRC6AQ8NDV7 1962 aaKnown RBP13.2□□□□□ -0.3
LIMS1-201ENST00000332345 SPTA1P02549 2419 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 OR2W5A6NFC9 320 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 MASP2O00187 686 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 PLIN3O60664 434 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 SH3BGRLO75368 114 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 PROCP04070 461 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 COX6A1P12074 109 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 ATP5A1P25705 553 aaKnown RBP13.19□□□□□ -0.3
LIMS1-201ENST00000332345 RAB38P57729 211 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 RPS13P62277 151 aaKnown RBP13.19□□□□□ -0.3
LIMS1-201ENST00000332345 EEF1A2Q05639 463 aaKnown RBP13.19□□□□□ -0.3
LIMS1-201ENST00000332345 KLRB1Q12918 225 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 CUL3Q13618 768 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 RAPSNQ13702 412 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 GGTA1PQ4G0N0 100 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 AGAP7PQ5VUJ5 663 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 FRG2Q64ET8 278 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 ZYG11AQ6WRX3 759 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 QSOX2Q6ZRP7 698 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 RIPOR1Q6ZS17 1223 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 RPS27LQ71UM5 84 aaKnown RBP13.19□□□□□ -0.3
LIMS1-201ENST00000332345 UBE3DQ7Z6J8 389 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 ANKRD37Q7Z713 158 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 ZNF605Q86T29 641 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 TRABD2AQ86V40 505 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 PTRH1Q86Y79 214 aaKnown RBP13.19□□□□□ -0.3
LIMS1-201ENST00000332345 SHISA5Q8N114 240 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 C4orf33Q8N1A6 199 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 ACOT4Q8N9L9 421 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 OR4F6Q8NGB9 312 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 WDR20Q8TBZ3 569 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 TRPC4APQ8TEL6 797 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 MTFMTQ96DP5 389 aaKnown RBP13.19□□□□□ -0.3
LIMS1-201ENST00000332345 L3HYPDHQ96EM0 354 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 THOC3Q96J01 351 aaKnown RBP13.19□□□□□ -0.3
LIMS1-201ENST00000332345 AGAP4Q96P64 663 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 FRG2BQ96QU4 278 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 RBCK1Q9BYM8 510 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 OR51B5Q9H339 312 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 ELOVL6Q9H5J4 265 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 LYRM4Q9HD34 91 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 PRDM9Q9NQV7 894 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 MID2Q9UJV3 735 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 ANAPC2Q9UJX6 822 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 EMCNQ9ULC0 261 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 PPT2Q9UMR5 302 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 SNX6Q9UNH7 406 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 MMACHCQ9Y4U1 282 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 SPACA6W5XKT8 324 aa13.19□□□□□ -0.3
LIMS1-201ENST00000332345 FAM227AF5H4B4 570 aa13.18□□□□□ -0.3
LIMS1-201ENST00000332345 G3V2L1 256 aa13.18□□□□□ -0.3
LIMS1-201ENST00000332345 K7EM74 188 aa13.18□□□□□ -0.3
LIMS1-201ENST00000332345 SAP18O00422 153 aaKnown RBP13.18□□□□□ -0.3
LIMS1-201ENST00000332345 DPM1O60762 260 aa13.18□□□□□ -0.3
LIMS1-201ENST00000332345 ERLIN1O75477 346 aa13.18□□□□□ -0.3
LIMS1-201ENST00000332345 SERPINA7P05543 415 aa13.18□□□□□ -0.3
LIMS1-201ENST00000332345 CPA3P15088 417 aa13.18□□□□□ -0.3
LIMS1-201ENST00000332345 TSPAN8P19075 237 aa13.18□□□□□ -0.3
LIMS1-201ENST00000332345 HIST1H1TP22492 207 aaPredicted RBP13.18□□□□□ -0.3
LIMS1-201ENST00000332345 SSR2P43308 183 aa13.18□□□□□ -0.3
LIMS1-201ENST00000332345 NEK2P51955 445 aa13.18□□□□□ -0.3
LIMS1-201ENST00000332345 EFNA3P52797 238 aa13.18□□□□□ -0.3
LIMS1-201ENST00000332345 LIM2P55344 173 aa13.18□□□□□ -0.3
LIMS1-201ENST00000332345 OR4D2P58180 307 aa13.18□□□□□ -0.3
LIMS1-201ENST00000332345 DNAJB13P59910 316 aa13.18□□□□□ -0.3
LIMS1-201ENST00000332345 BTG2P78543 158 aa13.18□□□□□ -0.3
LIMS1-201ENST00000332345 TRAF3Q13114 568 aa13.18□□□□□ -0.3
LIMS1-201ENST00000332345 PCOLCEQ15113 449 aa13.18□□□□□ -0.3
LIMS1-201ENST00000332345 CFAP157Q5JU67 520 aa13.18□□□□□ -0.3
LIMS1-201ENST00000332345 LANCL3Q6ZV70 420 aa13.18□□□□□ -0.3
LIMS1-201ENST00000332345 CROCCP2Q86T23 111 aa13.18□□□□□ -0.3
LIMS1-201ENST00000332345 SRRM1Q8IYB3 904 aaKnown RBP13.18□□□□□ -0.3
LIMS1-201ENST00000332345 ZNF595Q8IYB9 648 aa13.18□□□□□ -0.3
LIMS1-201ENST00000332345 RNF175Q8N4F7 328 aa13.18□□□□□ -0.3
LIMS1-201ENST00000332345 C7orf57Q8NEG2 295 aa13.18□□□□□ -0.3
LIMS1-201ENST00000332345 TM9SF4Q92544 642 aa13.18□□□□□ -0.3
LIMS1-201ENST00000332345 IMMP1LQ96LU5 166 aa13.18□□□□□ -0.3
LIMS1-201ENST00000332345 TMEM237Q96Q45 408 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms