RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 SEC16BQ96JE7 1060 aa18.26■□□□□ 0.51
LIME1-201ENST00000309546 UBXN10Q96LJ8 280 aa18.26■□□□□ 0.51
LIME1-201ENST00000309546 EFCAB11Q9BUY7 163 aa18.26■□□□□ 0.51
LIME1-201ENST00000309546 NPLQ9BXD5 320 aaPredicted RBP18.26■□□□□ 0.51
LIME1-201ENST00000309546 DEFB126Q9BYW3 111 aa18.26■□□□□ 0.51
LIME1-201ENST00000309546 SUCOQ9UBS9 1254 aaKnown RBP18.26■□□□□ 0.51
LIME1-201ENST00000309546 PTBP2Q9UKA9 531 aaKnown RBP18.26■□□□□ 0.51
LIME1-201ENST00000309546 ASB1Q9Y576 335 aa18.26■□□□□ 0.51
LIME1-201ENST00000309546 CCL21O00585 134 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 FCHO1O14526 889 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 SLC25A12O75746 678 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 NEURL1O76050 574 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 WISP2O76076 250 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 SP1P08047 785 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 SLC35E2BP0CK96 405 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 CD22P20273 847 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 PPP2R1BP30154 601 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 HNRNPFP52597 415 aaKnown RBP18.25■□□□□ 0.51
LIME1-201ENST00000309546 MLF1P58340 268 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 SLC7A5Q01650 507 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 IRF8Q02556 426 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 DLG1Q12959 904 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 CHIT1Q13231 466 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 MAPKAPK3Q16644 382 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 HIST2H2ACQ16777 129 aaPredicted RBP18.25■□□□□ 0.51
LIME1-201ENST00000309546 PAGE2BQ5JRK9 111 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 HIST2H2AA3Q6FI13 130 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 SLC25A25Q6KCM7 469 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 LRRC70Q7Z2Q7 622 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 CLNKQ7Z7G1 428 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 SCUBE1Q8IWY4 988 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 TMEM52Q8NDY8 209 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 STAG3L4Q8TBR4 150 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 ADAMTS18Q8TE60 1221 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 THAP3Q8WTV1 239 aaPredicted RBP18.25■□□□□ 0.51
LIME1-201ENST00000309546 MRRFQ96E11 262 aaKnown RBP18.25■□□□□ 0.51
LIME1-201ENST00000309546 FRMD6Q96NE9 622 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 QRFPRQ96P65 431 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 F2RL3Q96RI0 385 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 CSF3RQ99062 836 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 NUDT4Q9NZJ9 180 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 FBXW2Q9UKT8 454 aa18.25■□□□□ 0.51
LIME1-201ENST00000309546 ZNF490Q9ULM2 529 aaPredicted RBP18.25■□□□□ 0.51
LIME1-201ENST00000309546 MRPS33Q9Y291 106 aaKnown RBP18.25■□□□□ 0.51
LIME1-201ENST00000309546 NPIPA5E9PKD4 350 aa18.24■□□□□ 0.51
LIME1-201ENST00000309546 UBXN8O00124 270 aa18.24■□□□□ 0.51
LIME1-201ENST00000309546 CLDN4O14493 209 aa18.24■□□□□ 0.51
LIME1-201ENST00000309546 MLYCDO95822 493 aa18.24■□□□□ 0.51
LIME1-201ENST00000309546 TBX6O95947 436 aaPredicted RBP18.24■□□□□ 0.51
LIME1-201ENST00000309546 LTA4HP09960 611 aaKnown RBP18.24■□□□□ 0.51
LIME1-201ENST00000309546 MSH2P43246 934 aa18.24■□□□□ 0.51
LIME1-201ENST00000309546 KCNC1P48547 511 aa18.24■□□□□ 0.51
LIME1-201ENST00000309546 CYB561P49447 251 aa18.24■□□□□ 0.51
LIME1-201ENST00000309546 CLCN2P51788 898 aa18.24■□□□□ 0.51
LIME1-201ENST00000309546 MTTPP55157 894 aa18.24■□□□□ 0.51
LIME1-201ENST00000309546 CKAP4Q07065 602 aaKnown RBP18.24■□□□□ 0.51
LIME1-201ENST00000309546 TGM3Q08188 693 aa18.24■□□□□ 0.51
LIME1-201ENST00000309546 NAB1Q13506 487 aa18.24■□□□□ 0.51
LIME1-201ENST00000309546 LAPTM5Q13571 262 aa18.24■□□□□ 0.51
LIME1-201ENST00000309546 ADPRMQ3LIE5 342 aa18.24■□□□□ 0.51
LIME1-201ENST00000309546 C8orf74Q6P047 294 aa18.24■□□□□ 0.51
LIME1-201ENST00000309546 ABHD17CQ6PCB6 329 aa18.24■□□□□ 0.51
LIME1-201ENST00000309546 PNPLA5Q7Z6Z6 429 aaPredicted RBP18.24■□□□□ 0.51
LIME1-201ENST00000309546 B3GNT7Q8NFL0 401 aa18.24■□□□□ 0.51
LIME1-201ENST00000309546 WDR34Q96EX3 536 aa18.24■□□□□ 0.51
LIME1-201ENST00000309546 MAGED4Q96JG8 741 aa18.24■□□□□ 0.51
LIME1-201ENST00000309546 SERINC2Q96SA4 455 aa18.24■□□□□ 0.51
LIME1-201ENST00000309546 CD244Q9BZW8 370 aa18.24■□□□□ 0.51
LIME1-201ENST00000309546 NMRAL1Q9HBL8 299 aa18.24■□□□□ 0.51
LIME1-201ENST00000309546 NPIPA1Q9UND3 350 aa18.24■□□□□ 0.51
LIME1-201ENST00000309546 UNC79Q9P2D8 2635 aa18.23■□□□□ 0.51
LIME1-201ENST00000309546 ASPDHA6ND91 283 aa18.23■□□□□ 0.51
LIME1-201ENST00000309546 TGFBR3LH3BV60 316 aa18.23■□□□□ 0.51
LIME1-201ENST00000309546 SH3BGRLO75368 114 aa18.23■□□□□ 0.51
LIME1-201ENST00000309546 PCNAP12004 261 aa18.23■□□□□ 0.51
LIME1-201ENST00000309546 EPORP19235 508 aa18.23■□□□□ 0.51
LIME1-201ENST00000309546 CRABP2P29373 138 aa18.23■□□□□ 0.51
LIME1-201ENST00000309546 CA7P43166 264 aa18.23■□□□□ 0.51
LIME1-201ENST00000309546 CASP6P55212 293 aa18.23■□□□□ 0.51
LIME1-201ENST00000309546 LIM2P55344 173 aa18.23■□□□□ 0.51
LIME1-201ENST00000309546 HSD17B7P56937 341 aa18.23■□□□□ 0.51
LIME1-201ENST00000309546 BMPR2Q13873 1038 aa18.23■□□□□ 0.51
LIME1-201ENST00000309546 ISCA2Q86U28 154 aa18.23■□□□□ 0.51
LIME1-201ENST00000309546 ZNF595Q8IYB9 648 aa18.23■□□□□ 0.51
LIME1-201ENST00000309546 APCDD1LQ8NCL9 501 aa18.23■□□□□ 0.51
LIME1-201ENST00000309546 NCLNQ969V3 563 aa18.23■□□□□ 0.51
LIME1-201ENST00000309546 TMEM125Q96AQ2 219 aa18.23■□□□□ 0.51
LIME1-201ENST00000309546 CCDC120Q96HB5 630 aa18.23■□□□□ 0.51
LIME1-201ENST00000309546 GPR137Q96N19 417 aa18.23■□□□□ 0.51
LIME1-201ENST00000309546 IGSF5Q9NSI5 407 aa18.23■□□□□ 0.51
LIME1-201ENST00000309546 OPTCQ9UBM4 332 aa18.23■□□□□ 0.51
LIME1-201ENST00000309546 MYOCOSA0A1B0GUC4 107 aa18.22■□□□□ 0.51
LIME1-201ENST00000309546 PRSS44E7EML9 344 aa18.22■□□□□ 0.51
LIME1-201ENST00000309546 NME2P1O60361 137 aa18.22■□□□□ 0.51
LIME1-201ENST00000309546 SLC19A2O60779 497 aa18.22■□□□□ 0.51
LIME1-201ENST00000309546 KERAO60938 352 aa18.22■□□□□ 0.51
LIME1-201ENST00000309546 IFNA16P05015 189 aa18.22■□□□□ 0.51
LIME1-201ENST00000309546 NME2P22392 152 aa18.22■□□□□ 0.51
LIME1-201ENST00000309546 HLCSP50747 726 aa18.22■□□□□ 0.51
LIME1-201ENST00000309546 IRF9Q00978 393 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms