RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 KCT2Q8NC54 265 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 ZDHHC12Q96GR4 267 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 PANX1Q96RD7 426 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 CD180Q99467 661 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 TRIM8Q9BZR9 551 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 TAS2R7Q9NYW3 318 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 EHD3Q9NZN3 535 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 ERVK-11Q9UQG0 969 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 ASB4Q9Y574 426 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 GMEB1Q9Y692 573 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 A0A0G2JN53 185 aa13.4□□□□□ -0.26
SS18-201ENST00000269137 TLCD2A6NGC4 264 aa13.4□□□□□ -0.26
SS18-201ENST00000269137 SLC9B1P1A6NJY1 282 aa13.4□□□□□ -0.26
SS18-201ENST00000269137 P2RX6O15547 441 aa13.4□□□□□ -0.26
SS18-201ENST00000269137 KRT36O76013 467 aa13.4□□□□□ -0.26
SS18-201ENST00000269137 CFIP05156 583 aa13.4□□□□□ -0.26
SS18-201ENST00000269137 HTR1EP28566 365 aa13.4□□□□□ -0.26
SS18-201ENST00000269137 MTPNP58546 118 aa13.4□□□□□ -0.26
SS18-201ENST00000269137 RAB8AP61006 207 aa13.4□□□□□ -0.26
SS18-201ENST00000269137 SLAMF1Q13291 335 aa13.4□□□□□ -0.26
SS18-201ENST00000269137 SELPLGQ14242 412 aa13.4□□□□□ -0.26
SS18-201ENST00000269137 MPEG1Q2M385 716 aa13.4□□□□□ -0.26
SS18-201ENST00000269137 GTDC1Q4AE62 458 aa13.4□□□□□ -0.26
SS18-201ENST00000269137 ZC3H12BQ5HYM0 836 aaKnown RBP13.4□□□□□ -0.26
SS18-201ENST00000269137 DNAJC14Q6Y2X3 702 aaPredicted RBP13.4□□□□□ -0.26
SS18-201ENST00000269137 CARFQ8N187 725 aa13.4□□□□□ -0.26
SS18-201ENST00000269137 OR8K5Q8NH50 307 aa13.4□□□□□ -0.26
SS18-201ENST00000269137 GOT1L1Q8NHS2 421 aaPredicted RBP13.4□□□□□ -0.26
SS18-201ENST00000269137 TCTN2Q96GX1 697 aa13.4□□□□□ -0.26
SS18-201ENST00000269137 MAP3K3Q99759 626 aa13.4□□□□□ -0.26
SS18-201ENST00000269137 KCTD14Q9BQ13 255 aaPredicted RBP13.4□□□□□ -0.26
SS18-201ENST00000269137 CPPED1Q9BRF8 314 aaPredicted RBP13.4□□□□□ -0.26
SS18-201ENST00000269137 FAIM2Q9BWQ8 316 aa13.4□□□□□ -0.26
SS18-201ENST00000269137 PCDHAC1Q9H158 963 aa13.4□□□□□ -0.26
SS18-201ENST00000269137 IL21RQ9HBE5 538 aa13.4□□□□□ -0.26
SS18-201ENST00000269137 GMPR2Q9P2T1 348 aaKnown RBP13.4□□□□□ -0.26
SS18-201ENST00000269137 SLC6A14Q9UN76 642 aa13.4□□□□□ -0.26
SS18-201ENST00000269137 PCDH15Q96QU1 1955 aa13.4□□□□□ -0.26
SS18-201ENST00000269137 IGHV1OR21-1A0A087WYE8 117 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 ANP32DO95626 131 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 GSNP06396 782 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 ZNF888P0CJ79 500 aaPredicted RBP13.39□□□□□ -0.27
SS18-201ENST00000269137 ALPPL2P10696 532 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 ALDH4A1P30038 563 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 GPLD1P80108 840 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 SUZ12Q15022 739 aaKnown RBP13.39□□□□□ -0.27
SS18-201ENST00000269137 ANGPT1Q15389 498 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 CCDC6Q16204 474 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 SLC23A3Q6PIS1 610 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 CLECL1Q8IZS7 167 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 MMP21Q8N119 569 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 DNAJC22Q8N4W6 341 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 BHLHE22Q8NFJ8 381 aaPredicted RBP13.39□□□□□ -0.27
SS18-201ENST00000269137 OR6C4Q8NGE1 309 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 OR4C6Q8NH72 309 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 ECSITQ9BQ95 431 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 THUMPD3Q9BV44 507 aaKnown RBP13.39□□□□□ -0.27
SS18-201ENST00000269137 IKZF5Q9H5V7 419 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 S100A14Q9HCY8 104 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 FAM60AQ9NP50 221 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 LYARQ9NX58 379 aaKnown RBP13.39□□□□□ -0.27
SS18-201ENST00000269137 TEX10Q9NXF1 929 aaPredicted RBP13.39□□□□□ -0.27
SS18-201ENST00000269137 ACTR3BQ9P1U1 418 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 STX18Q9P2W9 335 aaKnown RBP13.39□□□□□ -0.27
SS18-201ENST00000269137 PADI4Q9UM07 663 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 UNC13CQ8NB66 2214 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 SH3BP5O60239 455 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 SRPX2O60687 465 aaPredicted RBP13.39□□□□□ -0.27
SS18-201ENST00000269137 STAMBPO95630 424 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 CPSF4O95639 269 aaKnown RBP13.39□□□□□ -0.27
SS18-201ENST00000269137 PNLIPP16233 465 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 ZNF10P21506 573 aaPredicted RBP13.39□□□□□ -0.27
SS18-201ENST00000269137 CERS1P27544 350 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 OR1D5P58170 312 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 BTN3A2P78410 334 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 RCN1Q15293 331 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 PRSS53Q2L4Q9 553 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 MUM1Q2TAK8 710 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 WLSQ5T9L3 541 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 NDUFAF5Q5TEU4 345 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 TMEM214Q6NUQ4 689 aaKnown RBP13.39□□□□□ -0.27
SS18-201ENST00000269137 ZNF621Q6ZSS3 439 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 ABHD13Q7L211 337 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 DHFR2Q86XF0 187 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 CSNK1A1LQ8N752 337 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 FAM181AQ8N9Y4 354 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 SLC26A7Q8TE54 656 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 NCSTNQ92542 709 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 ZNF583Q96ND8 569 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 NLNQ9BYT8 704 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 GAREM1Q9H706 876 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 KAT8Q9H7Z6 458 aaKnown RBP13.39□□□□□ -0.27
SS18-201ENST00000269137 COPS7BQ9H9Q2 264 aaPredicted RBP13.39□□□□□ -0.27
SS18-201ENST00000269137 NKX1-2Q9UD57 310 aaPredicted RBP13.39□□□□□ -0.27
SS18-201ENST00000269137 PCDHB3Q9Y5E6 796 aa13.39□□□□□ -0.27
SS18-201ENST00000269137 RP1P56715 2156 aa13.38□□□□□ -0.27
SS18-201ENST00000269137 TXNDC9O14530 226 aa13.38□□□□□ -0.27
SS18-201ENST00000269137 B4GAT1O43505 415 aa13.38□□□□□ -0.27
SS18-201ENST00000269137 DUX1O43812 170 aa13.38□□□□□ -0.27
SS18-201ENST00000269137 EPN2O95208 641 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms