RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 OTUB1Q96FW1 271 aaPredicted RBP15.69■□□□□ 0.1
USP4-201ENST00000265560 NAF1Q96HR8 494 aaKnown RBP15.69■□□□□ 0.1
USP4-201ENST00000265560 ZNF184Q99676 751 aaPredicted RBP15.69■□□□□ 0.1
USP4-201ENST00000265560 KLHL4Q9C0H6 718 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 MRPS2Q9Y399 296 aaKnown RBP15.69■□□□□ 0.1
USP4-201ENST00000265560 LRRC42Q9Y546 428 aa15.69■□□□□ 0.1
USP4-201ENST00000265560 GGT1P19440 569 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 CRATP43155 626 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 DHPSP49366 369 aaPredicted RBP15.68■□□□□ 0.1
USP4-201ENST00000265560 DEFB134Q4QY38 66 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 NDUFAF5Q5TEU4 345 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 UBALD2Q8IYN6 164 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 ZUFSPQ96AP4 578 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 METTL2AQ96IZ6 378 aaKnown RBP15.68■□□□□ 0.1
USP4-201ENST00000265560 ANKRA2Q9H9E1 313 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 FAM60AQ9NP50 221 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 PCDHGB4Q9UN71 923 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 AP1M2Q9Y6Q5 423 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 ASCC3Q8N3C0 2202 aaKnown RBP15.68■□□□□ 0.1
USP4-201ENST00000265560 A0A1W2PRB8 838 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 ZNF888P0CJ79 500 aaPredicted RBP15.68■□□□□ 0.1
USP4-201ENST00000265560 NME1P15531 152 aaKnown RBP15.68■□□□□ 0.1
USP4-201ENST00000265560 ALDH4A1P30038 563 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 C10orf62Q5T681 223 aaPredicted RBP15.68■□□□□ 0.1
USP4-201ENST00000265560 IRGCQ6NXR0 463 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 FAM92BQ6ZTR7 304 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 HOMEZQ8IX15 550 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 CADM4Q8NFZ8 388 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 EME1Q96AY2 570 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 PRDM7Q9NQW5 492 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 CCM2LQ9NUG4 571 aaPredicted RBP15.68■□□□□ 0.1
USP4-201ENST00000265560 POT1Q9NUX5 634 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 GPATCH2Q9NW75 528 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 ATP6V1HQ9UI12 483 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 TXNDC9O14530 226 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 ETFAP13804 333 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 KLC1Q07866 573 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 FOXD4Q12950 439 aaPredicted RBP15.68■□□□□ 0.1
USP4-201ENST00000265560 ABHD17CQ6PCB6 329 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 SPESP1Q6UW49 350 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 LPCAT2Q7L5N7 544 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 PAGE2Q7Z2X7 111 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 MICU2Q8IYU8 434 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 CCDC115Q96NT0 180 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 SLC29A1Q99808 456 aa15.68■□□□□ 0.1
USP4-201ENST00000265560 BCAT2O15382 392 aaPredicted RBP15.67■□□□□ 0.1
USP4-201ENST00000265560 GMNNO75496 209 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 PRKD3O94806 890 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 FAM58BPP0C7Q3 252 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 ST6GAL1P15907 406 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 GCKP35557 465 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 TRPC1P48995 793 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 GZMMP51124 257 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 KIR2DS3Q14952 304 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 SLC5A12Q1EHB4 618 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 SH3GL1Q99961 368 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 SLC35A5Q9BS91 424 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 C6orf203Q9P0P8 240 aaPredicted RBP15.67■□□□□ 0.1
USP4-201ENST00000265560 TSC22D4Q9Y3Q8 395 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 DTNAQ9Y4J8 743 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 TMEM131Q92545 1883 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 KIR2DS5A0A0G2JLQ3 304 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 A0A0G2JNG1 304 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 A0A1W2PR48 441 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 AQP12BA6NM10 295 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 KIR2DS3K7RE56 304 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 KCNK5O95279 499 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 SERPINA1P01009 418 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 ANXA6P08133 673 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 IL1RNP18510 177 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 DDCP20711 480 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 HIST1H1TP22492 207 aaPredicted RBP15.67■□□□□ 0.1
USP4-201ENST00000265560 MANFP55145 182 aaKnown RBP15.67■□□□□ 0.1
USP4-201ENST00000265560 KIR2DS5Q14953 304 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 ELOCQ15369 112 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 CWF19L1Q69YN2 538 aaKnown RBP15.67■□□□□ 0.1
USP4-201ENST00000265560 SLC44A2Q8IWA5 706 aaPredicted RBP15.67■□□□□ 0.1
USP4-201ENST00000265560 AQP12AQ8IXF9 295 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 MFSD9Q8NBP5 474 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 OR2A5Q96R48 311 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 TRIM15Q9C019 465 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 COQ10BQ9H8M1 238 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 ANAPC2Q9UJX6 822 aa15.67■□□□□ 0.1
USP4-201ENST00000265560 C1orf226A1L170 272 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 AQP9O43315 295 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 CREG1O75629 220 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 SEMA3DO95025 777 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 ZNF682O95780 498 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 IL10P22301 178 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 ATP5A1P25705 553 aaKnown RBP15.66■□□□□ 0.1
USP4-201ENST00000265560 FEN1P39748 380 aaKnown RBP15.66■□□□□ 0.1
USP4-201ENST00000265560 PDE7AQ13946 482 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 ADRM1Q16186 407 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 CYP27C1Q4G0S4 372 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 ANXA8L1Q5VT79 327 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 TRIM40Q6P9F5 258 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 RNF130Q86XS8 419 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 TRPV3Q8NET8 790 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 OR2L5Q8NG80 312 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 SLC22A18Q96BI1 424 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms