RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 F2RL3Q96RI0 385 aa20.39■□□□□ 0.85
TRIM28-201ENST00000253024 PRR14Q9BWN1 585 aa20.39■□□□□ 0.85
TRIM28-201ENST00000253024 MROQ9BYG7 248 aa20.39■□□□□ 0.85
TRIM28-201ENST00000253024 DYRK1BQ9Y463 629 aa20.39■□□□□ 0.85
TRIM28-201ENST00000253024 DOCK9Q9BZ29 2069 aa20.39■□□□□ 0.85
TRIM28-201ENST00000253024 A0A1W2PRB8 838 aa20.39■□□□□ 0.85
TRIM28-201ENST00000253024 C1orf105O95561 183 aa20.39■□□□□ 0.85
TRIM28-201ENST00000253024 ADORA3P0DMS8 318 aa20.39■□□□□ 0.85
TRIM28-201ENST00000253024 VIPR2P41587 438 aa20.39■□□□□ 0.85
TRIM28-201ENST00000253024 DNAJC22Q8N4W6 341 aa20.39■□□□□ 0.85
TRIM28-201ENST00000253024 C16orf78Q8WTQ4 265 aa20.39■□□□□ 0.85
TRIM28-201ENST00000253024 SLC38A4Q969I6 547 aa20.39■□□□□ 0.85
TRIM28-201ENST00000253024 REEP4Q9H6H4 257 aa20.39■□□□□ 0.85
TRIM28-201ENST00000253024 ZNF556Q9HAH1 456 aa20.39■□□□□ 0.85
TRIM28-201ENST00000253024 ERVK13-1Q9NX77 482 aa20.39■□□□□ 0.85
TRIM28-201ENST00000253024 POU2F3Q9UKI9 436 aa20.39■□□□□ 0.85
TRIM28-201ENST00000253024 HELZP42694 1942 aaKnown RBP20.38■□□□□ 0.85
TRIM28-201ENST00000253024 LZTS3O60299 673 aaPredicted RBP20.38■□□□□ 0.85
TRIM28-201ENST00000253024 GADD45GO95257 159 aa20.38■□□□□ 0.85
TRIM28-201ENST00000253024 CNR2P34972 360 aa20.38■□□□□ 0.85
TRIM28-201ENST00000253024 GPR1P46091 355 aa20.38■□□□□ 0.85
TRIM28-201ENST00000253024 PTGES3Q15185 160 aaKnown RBP20.38■□□□□ 0.85
TRIM28-201ENST00000253024 DEPDC1Q5TB30 811 aa20.38■□□□□ 0.85
TRIM28-201ENST00000253024 BRAT1Q6PJG6 821 aa20.38■□□□□ 0.85
TRIM28-201ENST00000253024 SLC39A5Q6ZMH5 540 aa20.38■□□□□ 0.85
TRIM28-201ENST00000253024 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.38■□□□□ 0.858e-7■□□□□ 11.1
TRIM28-201ENST00000253024 LRRC3BQ96PB8 259 aa20.38■□□□□ 0.85
TRIM28-201ENST00000253024 CPEB1Q9BZB8 566 aaKnown RBP20.38■□□□□ 0.85
TRIM28-201ENST00000253024 GABARAPL1Q9H0R8 117 aa20.38■□□□□ 0.85
TRIM28-201ENST00000253024 NECTIN3Q9NQS3 549 aa20.38■□□□□ 0.85
TRIM28-201ENST00000253024 TRBV4-1A0A0J9YWV2 114 aa20.38■□□□□ 0.85
TRIM28-201ENST00000253024 CTDSP2O14595 271 aa20.38■□□□□ 0.85
TRIM28-201ENST00000253024 CXCL10P02778 98 aa20.38■□□□□ 0.85
TRIM28-201ENST00000253024 WASP42768 502 aa20.38■□□□□ 0.85
TRIM28-201ENST00000253024 SP140Q13342 867 aa20.38■□□□□ 0.85
TRIM28-201ENST00000253024 ZNF404Q494X3 552 aa20.38■□□□□ 0.85
TRIM28-201ENST00000253024 STEAP3Q658P3 488 aa20.38■□□□□ 0.85
TRIM28-201ENST00000253024 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP20.38■□□□□ 0.85
TRIM28-201ENST00000253024 FAM83HQ6ZRV2 1179 aaPredicted RBP20.38■□□□□ 0.85
TRIM28-201ENST00000253024 WDR36Q8NI36 951 aaKnown RBP20.38■□□□□ 0.85
TRIM28-201ENST00000253024 FAM210AQ96ND0 272 aa20.38■□□□□ 0.85
TRIM28-201ENST00000253024 CLEC2DQ9UHP7 191 aa20.38■□□□□ 0.85
TRIM28-201ENST00000253024 H0YIV9 168 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 NTN1O95631 604 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 RCVRNP35243 200 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 GGT2P36268 569 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 MPP7Q5T2T1 576 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 PAQR6Q6TCH4 344 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 CEACAM20Q6UY09 585 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 PLEKHG7Q6ZR37 379 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 PTCHD4Q6ZW05 846 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 RBM12BQ8IXT5 1001 aaKnown RBP20.37■□□□□ 0.85
TRIM28-201ENST00000253024 UBE2J2Q8N2K1 259 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 KLK6Q92876 244 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 TMEM203Q969S6 136 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 HHIPQ96QV1 700 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 CHST8Q9H2A9 424 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 CUEDC1Q9NWM3 386 aaPredicted RBP20.37■□□□□ 0.85
TRIM28-201ENST00000253024 PSORS1C1Q9UIG5 152 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 RHOP08100 348 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 PRPH2P23942 346 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 SLAIN1Q8ND83 568 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 OR5D16Q8NGK9 328 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 NXPE3Q969Y0 559 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 CXorf36Q9H7Y0 433 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 ANKRA2Q9H9E1 313 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 ATAD3AQ9NVI7 634 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 TAC3Q9UHF0 121 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 CLCA1A8K7I4 914 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 DSCR3O14972 297 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 POP7O75817 140 aaKnown RBP20.37■□□□□ 0.85
TRIM28-201ENST00000253024 ATXN8OSP0DMR3 200 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 ACVR2AP27037 513 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 ELP6Q0PNE2 266 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 SPDYE7PQ495Y7 208 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 ZSCAN5AQ9BUG6 496 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 SLAMF7Q9NQ25 335 aa20.37■□□□□ 0.85
TRIM28-201ENST00000253024 SCHIP1Q9P0W5 487 aaPredicted RBP20.37■□□□□ 0.85
TRIM28-201ENST00000253024 SLC5A10A0PJK1 596 aa20.36■□□□□ 0.85
TRIM28-201ENST00000253024 TNNI3P19429 210 aa20.36■□□□□ 0.85
TRIM28-201ENST00000253024 TGM1P22735 817 aa20.36■□□□□ 0.85
TRIM28-201ENST00000253024 TAP2Q03519 686 aa20.36■□□□□ 0.85
TRIM28-201ENST00000253024 VEZF1Q14119 521 aa20.36■□□□□ 0.85
TRIM28-201ENST00000253024 TPRG1LQ5T0D9 272 aa20.36■□□□□ 0.85
TRIM28-201ENST00000253024 TRAM1L1Q8N609 369 aa20.36■□□□□ 0.85
TRIM28-201ENST00000253024 C12orf76Q8N812 135 aaPredicted RBP20.36■□□□□ 0.85
TRIM28-201ENST00000253024 AMER3Q8N944 861 aa20.36■□□□□ 0.85
TRIM28-201ENST00000253024 C11orf24Q96F05 449 aaPredicted RBP20.36■□□□□ 0.85
TRIM28-201ENST00000253024 RSPO3Q9BXY4 272 aaPredicted RBP20.36■□□□□ 0.85
TRIM28-201ENST00000253024 DMRT3Q9NQL9 472 aa20.36■□□□□ 0.85
TRIM28-201ENST00000253024 ZNF282Q9UDV7 671 aaPredicted RBP20.36■□□□□ 0.85
TRIM28-201ENST00000253024 A8MV72 311 aaPredicted RBP20.36■□□□□ 0.85
TRIM28-201ENST00000253024 FURINP09958 794 aa20.36■□□□□ 0.85
TRIM28-201ENST00000253024 ASMTP46597 345 aa20.36■□□□□ 0.85
TRIM28-201ENST00000253024 SLC6A11P48066 632 aa20.36■□□□□ 0.85
TRIM28-201ENST00000253024 WDR5P61964 334 aaKnown RBP20.36■□□□□ 0.85
TRIM28-201ENST00000253024 ANXA8L1Q5VT79 327 aa20.36■□□□□ 0.85
TRIM28-201ENST00000253024 CNKSR3Q6P9H4 555 aa20.36■□□□□ 0.85
TRIM28-201ENST00000253024 SLC7A5P1Q8MH63 180 aa20.36■□□□□ 0.85
TRIM28-201ENST00000253024 CYP4Z2PQ8N1L4 340 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms