RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 FAM58BPP0C7Q3 252 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 FAM200BP0CF97 657 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 MYBL1P10243 752 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 KRT3P12035 628 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 FOSL2P15408 326 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 LBPP18428 481 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 GLRA1P23415 457 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 ACAT1P24752 427 aaKnown RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 PTAFRP25105 342 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 OXTRP30559 389 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 SRD5A2P31213 254 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 FCGR2BP31994 310 aaPredicted RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 FCGR2CP31995 323 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 OR1D2P34982 312 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 HSD17B3P37058 310 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 FEN1P39748 380 aaKnown RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 CAPGP40121 348 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 RGS7P49802 495 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 MEOX2P50222 304 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 NPY4RP50391 375 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 RAB28P51157 221 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 EFNA3P52797 238 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 NAGLUP54802 743 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 UCNP55089 124 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 RPP38P78345 283 aaKnown RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 SRPXP78539 464 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 ACY1Q03154 408 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 IL10RBQ08334 325 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 MFGE8Q08431 387 aaPredicted RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 LCP2Q13094 533 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 SGCGQ13326 291 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 MSLNQ13421 630 aaPredicted RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 TNK1Q13470 666 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 LTB4RQ15722 352 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 ZNF79Q15937 498 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 UGCGQ16739 394 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 CDO1Q16878 200 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 KNOP1Q1ED39 458 aaKnown RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 NHLRC3Q5JS37 347 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 C6orf136Q5SQH8 315 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 ARMC4Q5T2S8 1044 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 WDR78Q5VTH9 848 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 FAM46CQ5VWP2 391 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 CST9LP1Q5W188 147 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 KRT39Q6A163 491 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 TCEAL6Q6IPX3 200 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 SLC30A6Q6NXT4 461 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 TTC27Q6P3X3 843 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 CFAP161Q6P656 301 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 CTR9Q6PD62 1173 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 ZCCHC12Q6PEW1 402 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 TRAT1Q6PIZ9 186 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 MOXD1Q6UVY6 613 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 ENPP7Q6UWV6 458 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 PPP1R21Q6ZMI0 780 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 MCM10Q7L590 875 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 DET1Q7L5Y6 550 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 CHMP1BQ7LBR1 199 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 KRT74Q7RTS7 529 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 TRMT11Q7Z4G4 463 aaKnown RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 NRARPQ7Z6K4 114 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 DNAJB7Q7Z6W7 309 aaPredicted RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 PIGWQ7Z7B1 504 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 PCGF5Q86SE9 256 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 SERINC5Q86VE9 423 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 CREBRFQ8IUR6 639 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 NAXDQ8IW45 347 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 SLC43A2Q8N370 569 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 PRSS35Q8N3Z0 413 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 RYBPQ8N488 228 aaPredicted RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 CD177Q8N6Q3 437 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 TCEANCQ8N8B7 351 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 LSMEM1Q8N8F7 131 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 AVL9Q8NBF6 648 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 NOA1Q8NC60 698 aaKnown RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 CAMKVQ8NCB2 501 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 MCUQ8NE86 351 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 NFAM1Q8NET5 270 aaPredicted RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 Q8NFD4 153 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 OR6J1Q8NGC5 347 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 OR52B6Q8NGF0 335 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 OR4D10Q8NGI6 311 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 OR4C15Q8NGM1 316 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 OR6T1Q8NGN1 323 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 OR1B1Q8NGR6 318 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 ZNF564Q8TBZ8 553 aaPredicted RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 AGAP11Q8TF27 550 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 LIPHQ8WWY8 451 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 METTL21AQ8WXB1 218 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 CORO2AQ92828 525 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 EXT2Q93063 718 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 ST6GALNAC6Q969X2 333 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 PNPLA2Q96AD5 504 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 HDAC11Q96DB2 347 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 NXPE2Q96DL1 559 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 NUS1Q96E22 293 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 RADILQ96JH8 1075 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 RMDN2Q96LZ7 410 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 FER1L6-AS2Q96M78 137 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 ZNF558Q96NG5 402 aa0.3□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms