RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 CRCPO75575 148 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 OR4F21O95013 312 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 B3GALT4O96024 378 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 TGFB1P01137 390 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 HMOX2P30519 316 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 OTX2P32243 289 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 RAP1GDS1P52306 607 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 PLA2G16P53816 162 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 FOXL2P58012 376 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 BTN3A2P78410 334 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 IL10RAQ13651 578 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 SYT16Q17RD7 645 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 CRTC2Q53ET0 693 aaPredicted RBP17.12■□□□□ 0.33
CLN3-239ENST00000628023 SGO1Q5FBB7 561 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 TNFAIP8L3Q5GJ75 292 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 ATP1A1-AS1Q5TC04 95 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 MFSD4BQ5TF39 518 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 FRMD7Q6ZUT3 714 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 CHSY3Q70JA7 882 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 PDSS2Q86YH6 399 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 AFAP1L2Q8N4X5 818 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 AMER3Q8N944 861 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 OR2L5Q8NG80 312 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 OR2Y1Q8NGV0 311 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 C9orf43Q8TAL5 461 aaPredicted RBP17.12■□□□□ 0.33
CLN3-239ENST00000628023 STT3BQ8TCJ2 826 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 MS4A6EQ96DS6 147 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 F2RL3Q96RI0 385 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 MS4A8Q9BY19 250 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 SLC26A1Q9H2B4 701 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 TMBIM4Q9HC24 238 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 TRPS1Q9UHF7 1281 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 SNX6Q9UNH7 406 aa17.12■□□□□ 0.33
CLN3-239ENST00000628023 UQCRHLA0A096LP55 91 aa17.11■□□□□ 0.33
CLN3-239ENST00000628023 TM9SF1O15321 606 aa17.11■□□□□ 0.33
CLN3-239ENST00000628023 CNOT3O75175 753 aaKnown RBP17.11■□□□□ 0.33
CLN3-239ENST00000628023 ZWINTO95229 277 aa17.11■□□□□ 0.33
CLN3-239ENST00000628023 UQCRHP07919 91 aa17.11■□□□□ 0.33
CLN3-239ENST00000628023 ZGLP1P0C6A0 271 aa17.11■□□□□ 0.33
CLN3-239ENST00000628023 ALDH3A1P30838 453 aa17.11■□□□□ 0.33
CLN3-239ENST00000628023 NEK2P51955 445 aa17.11■□□□□ 0.33
CLN3-239ENST00000628023 PKNOX1P55347 436 aa17.11■□□□□ 0.33
CLN3-239ENST00000628023 RPS13P62277 151 aaKnown RBP17.11■□□□□ 0.33
CLN3-239ENST00000628023 OLR1P78380 273 aa17.11■□□□□ 0.33
CLN3-239ENST00000628023 UGT8Q16880 541 aa17.11■□□□□ 0.33
CLN3-239ENST00000628023 TMEM35AQ53FP2 167 aa17.11■□□□□ 0.33
CLN3-239ENST00000628023 VWA2Q5GFL6 755 aa17.11■□□□□ 0.33
CLN3-239ENST00000628023 C10orf62Q5T681 223 aaPredicted RBP17.11■□□□□ 0.33
CLN3-239ENST00000628023 FRG2Q64ET8 278 aa17.11■□□□□ 0.33
CLN3-239ENST00000628023 PTRH1Q86Y79 214 aaKnown RBP17.11■□□□□ 0.33
CLN3-239ENST00000628023 RAB43Q86YS6 212 aa17.11■□□□□ 0.33
CLN3-239ENST00000628023 RNF175Q8N4F7 328 aa17.11■□□□□ 0.33
CLN3-239ENST00000628023 CDYL2Q8N8U2 506 aa17.11■□□□□ 0.33
CLN3-239ENST00000628023 SRFBP1Q8NEF9 429 aaKnown RBP17.11■□□□□ 0.33
CLN3-239ENST00000628023 OR51Q1Q8NH59 317 aa17.11■□□□□ 0.33
CLN3-239ENST00000628023 MTFMTQ96DP5 389 aaKnown RBP17.11■□□□□ 0.33
CLN3-239ENST00000628023 FRG2BQ96QU4 278 aa17.11■□□□□ 0.33
CLN3-239ENST00000628023 MECRQ9BV79 373 aa17.11■□□□□ 0.33
CLN3-239ENST00000628023 OR51B5Q9H339 312 aa17.11■□□□□ 0.33
CLN3-239ENST00000628023 MID1IP1Q9NPA3 183 aa17.11■□□□□ 0.33
CLN3-239ENST00000628023 C14orf105Q9NVL8 296 aa17.11■□□□□ 0.33
CLN3-239ENST00000628023 TSC22D4Q9Y3Q8 395 aa17.11■□□□□ 0.33
CLN3-239ENST00000628023 SCN3AQ9NY46 2000 aa17.11■□□□□ 0.33
CLN3-239ENST00000628023 A0A1B0GTL3 188 aa17.1■□□□□ 0.33
CLN3-239ENST00000628023 MAGEB17A8MXT2 336 aa17.1■□□□□ 0.33
CLN3-239ENST00000628023 SAP18O00422 153 aaKnown RBP17.1■□□□□ 0.33
CLN3-239ENST00000628023 B3GALT2O43825 422 aa17.1■□□□□ 0.33
CLN3-239ENST00000628023 KLF7O75840 302 aaPredicted RBP17.1■□□□□ 0.33
CLN3-239ENST00000628023 XCR1P46094 333 aa17.1■□□□□ 0.33
CLN3-239ENST00000628023 MAGOHP61326 146 aaKnown RBP17.1■□□□□ 0.33
CLN3-239ENST00000628023 TLE1Q04724 770 aa17.1■□□□□ 0.33
CLN3-239ENST00000628023 DEFB109BQ30KR1 87 aa17.1■□□□□ 0.33
CLN3-239ENST00000628023 KHDRBS2Q5VWX1 349 aaKnown RBP17.1■□□□□ 0.33
CLN3-239ENST00000628023 ANKRD42Q8N9B4 389 aa17.1■□□□□ 0.33
CLN3-239ENST00000628023 OR5T3Q8NGG3 340 aa17.1■□□□□ 0.33
CLN3-239ENST00000628023 PPP1R14CQ8TAE6 165 aa17.1■□□□□ 0.33
CLN3-239ENST00000628023 WDR20Q8TBZ3 569 aa17.1■□□□□ 0.33
CLN3-239ENST00000628023 AGAP11Q8TF27 550 aa17.1■□□□□ 0.33
CLN3-239ENST00000628023 SELENOMQ8WWX9 145 aa17.1■□□□□ 0.33
CLN3-239ENST00000628023 PEX11GQ96HA9 241 aa17.1■□□□□ 0.33
CLN3-239ENST00000628023 KCNC2Q96PR1 638 aa17.1■□□□□ 0.33
CLN3-239ENST00000628023 SPSB2Q99619 263 aa17.1■□□□□ 0.33
CLN3-239ENST00000628023 CRB3Q9BUF7 120 aa17.1■□□□□ 0.33
CLN3-239ENST00000628023 RBCK1Q9BYM8 510 aa17.1■□□□□ 0.33
CLN3-239ENST00000628023 SLC29A3Q9BZD2 475 aa17.1■□□□□ 0.33
CLN3-239ENST00000628023 AICDAQ9GZX7 198 aa17.1■□□□□ 0.33
CLN3-239ENST00000628023 ANAPC2Q9UJX6 822 aa17.1■□□□□ 0.33
CLN3-239ENST00000628023 POLHQ9Y253 713 aa17.1■□□□□ 0.33
CLN3-239ENST00000628023 IGLV3-12A0A075B6K2 115 aa17.09■□□□□ 0.33
CLN3-239ENST00000628023 VSTM2BA6NLU5 285 aa17.09■□□□□ 0.33
CLN3-239ENST00000628023 C4orf51C9J302 202 aa17.09■□□□□ 0.33
CLN3-239ENST00000628023 H3BQF6 201 aa17.09■□□□□ 0.33
CLN3-239ENST00000628023 PSMD12O00232 456 aaPredicted RBP17.09■□□□□ 0.33
CLN3-239ENST00000628023 ESRRBO95718 433 aa17.09■□□□□ 0.33
CLN3-239ENST00000628023 TBX6O95947 436 aaPredicted RBP17.09■□□□□ 0.33
CLN3-239ENST00000628023 KRT6AP02538 564 aa17.09■□□□□ 0.33
CLN3-239ENST00000628023 KRT6BP04259 564 aa17.09■□□□□ 0.33
CLN3-239ENST00000628023 ENO1P06733 434 aaKnown RBP17.09■□□□□ 0.33
CLN3-239ENST00000628023 HEXBP07686 556 aa17.09■□□□□ 0.33
CLN3-239ENST00000628023 BPGMP07738 259 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms