RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 SMAD4Q13485 552 aaKnown RBP21.04■□□□□ 0.96
PNKP-220ENST00000627232 TRIM40Q6P9F5 258 aa21.04■□□□□ 0.96
PNKP-220ENST00000627232 UBE3DQ7Z6J8 389 aa21.04■□□□□ 0.96
PNKP-220ENST00000627232 PATL1Q86TB9 770 aaKnown RBP21.04■□□□□ 0.96
PNKP-220ENST00000627232 HIPK1Q86Z02 1210 aa21.04■□□□□ 0.96
PNKP-220ENST00000627232 CLEC4FQ8N1N0 589 aa21.04■□□□□ 0.96
PNKP-220ENST00000627232 RBM4BQ9BQ04 359 aaKnown RBP21.04■□□□□ 0.96
PNKP-220ENST00000627232 RBM4Q9BWF3 364 aaKnown RBP21.04■□□□□ 0.96
PNKP-220ENST00000627232 ASPSCR1Q9BZE9 553 aa21.04■□□□□ 0.96
PNKP-220ENST00000627232 TRIM4Q9C037 500 aa21.04■□□□□ 0.96
PNKP-220ENST00000627232 TMEM38AQ9H6F2 299 aa21.04■□□□□ 0.96
PNKP-220ENST00000627232 OR6C2Q9NZP2 312 aa21.04■□□□□ 0.96
PNKP-220ENST00000627232 CA5BQ9Y2D0 317 aa21.04■□□□□ 0.96
PNKP-220ENST00000627232 TMEM265A0A087WTH1 108 aa21.04■□□□□ 0.96
PNKP-220ENST00000627232 SMIM31A0A1B0GVY4 71 aa21.04■□□□□ 0.96
PNKP-220ENST00000627232 MAP3K13O43283 966 aa21.04■□□□□ 0.96
PNKP-220ENST00000627232 MBTPS2O43462 519 aa21.04■□□□□ 0.96
PNKP-220ENST00000627232 SEMA4FO95754 770 aa21.04■□□□□ 0.96
PNKP-220ENST00000627232 IGLV3-19P01714 112 aa21.04■□□□□ 0.96
PNKP-220ENST00000627232 GNAO1P09471 354 aa21.04■□□□□ 0.96
PNKP-220ENST00000627232 IGFBP4P22692 258 aa21.04■□□□□ 0.96
PNKP-220ENST00000627232 UQCRC2P22695 453 aa21.04■□□□□ 0.96
PNKP-220ENST00000627232 PEBP1P30086 187 aaKnown RBP21.04■□□□□ 0.96
PNKP-220ENST00000627232 ELOAQ14241 798 aaKnown RBP21.04■□□□□ 0.96
PNKP-220ENST00000627232 KCTD21Q4G0X4 260 aa21.04■□□□□ 0.96
PNKP-220ENST00000627232 TPRG1LQ5T0D9 272 aa21.04■□□□□ 0.96
PNKP-220ENST00000627232 GCNT6Q5T4J0 391 aa21.04■□□□□ 0.96
PNKP-220ENST00000627232 OR4C11Q6IEV9 310 aa21.04■□□□□ 0.96
PNKP-220ENST00000627232 PIWIL3Q7Z3Z3 882 aaKnown RBP21.04■□□□□ 0.96
PNKP-220ENST00000627232 PJA1Q8NG27 643 aa21.04■□□□□ 0.96
PNKP-220ENST00000627232 ZFP28Q8NHY6 868 aa21.04■□□□□ 0.96
PNKP-220ENST00000627232 OR5P2Q8WZ92 322 aa21.04■□□□□ 0.96
PNKP-220ENST00000627232 TTYH1Q9H313 450 aaPredicted RBP21.04■□□□□ 0.96
PNKP-220ENST00000627232 CLK4Q9HAZ1 481 aaKnown RBP21.04■□□□□ 0.96
PNKP-220ENST00000627232 TM9SF3Q9HD45 589 aa21.04■□□□□ 0.96
PNKP-220ENST00000627232 GPATCH2Q9NW75 528 aa21.04■□□□□ 0.96
PNKP-220ENST00000627232 IFT80Q9P2H3 777 aaPredicted RBP21.04■□□□□ 0.96
PNKP-220ENST00000627232 LRIT2A6NDA9 550 aa21.03■□□□□ 0.96
PNKP-220ENST00000627232 H0Y8X5 98 aa21.03■□□□□ 0.96
PNKP-220ENST00000627232 FABP3P05413 133 aa21.03■□□□□ 0.96
PNKP-220ENST00000627232 TFAP2AP05549 437 aa21.03■□□□□ 0.96
PNKP-220ENST00000627232 NUDT7P0C024 238 aa21.03■□□□□ 0.96
PNKP-220ENST00000627232 DCTP40126 519 aa21.03■□□□□ 0.96
PNKP-220ENST00000627232 BCL6P41182 706 aa21.03■□□□□ 0.96
PNKP-220ENST00000627232 FRKP42685 505 aaPredicted RBP21.03■□□□□ 0.96
PNKP-220ENST00000627232 CRATP43155 626 aa21.03■□□□□ 0.96
PNKP-220ENST00000627232 CCR5P51681 352 aa21.03■□□□□ 0.96
PNKP-220ENST00000627232 PPP2R2BQ00005 443 aa21.03■□□□□ 0.96
PNKP-220ENST00000627232 SPIDRQ14159 915 aa21.03■□□□□ 0.96
PNKP-220ENST00000627232 C16orf72Q14CZ0 275 aa21.03■□□□□ 0.96
PNKP-220ENST00000627232 ADPRMQ3LIE5 342 aa21.03■□□□□ 0.96
PNKP-220ENST00000627232 ZNF852Q6ZMS4 543 aa21.03■□□□□ 0.96
PNKP-220ENST00000627232 TSPAN14Q8NG11 270 aa21.03■□□□□ 0.96
PNKP-220ENST00000627232 EPS8L2Q9H6S3 715 aa21.03■□□□□ 0.96
PNKP-220ENST00000627232 POLMQ9NP87 494 aaPredicted RBP21.03■□□□□ 0.96
PNKP-220ENST00000627232 TRNAU1APQ9NX07 287 aaKnown RBP21.03■□□□□ 0.96
PNKP-220ENST00000627232 ADPRHL2Q9NX46 363 aa21.03■□□□□ 0.96
PNKP-220ENST00000627232 SNX7Q9UNH6 387 aa21.03■□□□□ 0.96
PNKP-220ENST00000627232 A0A0A6YYD5 115 aa21.02■□□□□ 0.96
PNKP-220ENST00000627232 PRAMEF33A0A0G2JMD5 474 aa21.02■□□□□ 0.96
PNKP-220ENST00000627232 SCAMP1O15126 338 aa21.02■□□□□ 0.96
PNKP-220ENST00000627232 PDPK1O15530 556 aa21.02■□□□□ 0.96
PNKP-220ENST00000627232 NOBOXO60393 691 aa21.02■□□□□ 0.96
PNKP-220ENST00000627232 DPM1O60762 260 aa21.02■□□□□ 0.96
PNKP-220ENST00000627232 PGM3O95394 542 aa21.02■□□□□ 0.96
PNKP-220ENST00000627232 AK4P27144 223 aaPredicted RBP21.02■□□□□ 0.96
PNKP-220ENST00000627232 CHI3L1P36222 383 aaPredicted RBP21.02■□□□□ 0.96
PNKP-220ENST00000627232 NR1H2P55055 460 aa21.02■□□□□ 0.96
PNKP-220ENST00000627232 SRP54P61011 504 aaKnown RBP21.02■□□□□ 0.96
PNKP-220ENST00000627232 LRRC32Q14392 662 aa21.02■□□□□ 0.96
PNKP-220ENST00000627232 OR2T5Q6IEZ7 315 aa21.02■□□□□ 0.96
PNKP-220ENST00000627232 SHQ1Q6PI26 577 aaKnown RBP21.02■□□□□ 0.96
PNKP-220ENST00000627232 AMIGO1Q86WK6 493 aa21.02■□□□□ 0.96
PNKP-220ENST00000627232 PLD3Q8IV08 490 aa21.02■□□□□ 0.96
PNKP-220ENST00000627232 SLC30A8Q8IWU4 369 aa21.02■□□□□ 0.96
PNKP-220ENST00000627232 MMP21Q8N119 569 aa21.02■□□□□ 0.96
PNKP-220ENST00000627232 TMEM145Q8NBT3 493 aa21.02■□□□□ 0.96
PNKP-220ENST00000627232 OR2T29Q8NH02 315 aa21.02■□□□□ 0.96
PNKP-220ENST00000627232 LCN9Q8WX39 176 aa21.02■□□□□ 0.96
PNKP-220ENST00000627232 TSACCQ96A04 125 aaPredicted RBP21.02■□□□□ 0.96
PNKP-220ENST00000627232 FBXL20Q96IG2 436 aa21.02■□□□□ 0.96
PNKP-220ENST00000627232 HSH2DQ96JZ2 352 aa21.02■□□□□ 0.96
PNKP-220ENST00000627232 DPH7Q9BTV6 452 aa21.02■□□□□ 0.96
PNKP-220ENST00000627232 YTHDF1Q9BYJ9 559 aaKnown RBP21.02■□□□□ 0.96
PNKP-220ENST00000627232 NLNQ9BYT8 704 aa21.02■□□□□ 0.96
PNKP-220ENST00000627232 GABARAPL1Q9H0R8 117 aa21.02■□□□□ 0.96
PNKP-220ENST00000627232 CAAP1Q9H8G2 361 aa21.02■□□□□ 0.96
PNKP-220ENST00000627232 SLC2A4RGQ9NR83 387 aa21.02■□□□□ 0.96
PNKP-220ENST00000627232 C1GALT1Q9NS00 363 aa21.02■□□□□ 0.96
PNKP-220ENST00000627232 TAS2R7Q9NYW3 318 aa21.02■□□□□ 0.96
PNKP-220ENST00000627232 ZNF624Q9P2J8 865 aaPredicted RBP21.02■□□□□ 0.96
PNKP-220ENST00000627232 EBF1Q9UH73 591 aa21.02■□□□□ 0.96
PNKP-220ENST00000627232 C5orf42Q9H799 3197 aa21.02■□□□□ 0.96
PNKP-220ENST00000627232 A6NCN8 305 aa21.01■□□□□ 0.95
PNKP-220ENST00000627232 NARSO43776 548 aaKnown RBP21.01■□□□□ 0.95
PNKP-220ENST00000627232 TMPRSS11DO60235 418 aa21.01■□□□□ 0.95
PNKP-220ENST00000627232 E2F6O75461 281 aa21.01■□□□□ 0.95
PNKP-220ENST00000627232 CHRM5P08912 532 aaPredicted RBP21.01■□□□□ 0.95
PNKP-220ENST00000627232 ETFAP13804 333 aa21.01■□□□□ 0.95
PNKP-220ENST00000627232 DRD2P14416 443 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms