RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ASCL5Q7RTU5 278 aa23.84■■□□□ 1.41
SHMT1-207ENST00000580002 SLITRK4Q8IW52 837 aa23.84■■□□□ 1.41
SHMT1-207ENST00000580002 RP9Q8TA86 221 aaKnown RBP23.84■■□□□ 1.41
SHMT1-207ENST00000580002 GAL3ST3Q96A11 431 aa23.84■■□□□ 1.41
SHMT1-207ENST00000580002 ZNF285Q96NJ3 590 aa23.84■■□□□ 1.41
SHMT1-207ENST00000580002 H3BMH7 237 aa23.83■■□□□ 1.41
SHMT1-207ENST00000580002 AIM2O14862 343 aa23.83■■□□□ 1.41
SHMT1-207ENST00000580002 HYAL3O43820 417 aaPredicted RBP23.83■■□□□ 1.41
SHMT1-207ENST00000580002 LRP3O75074 770 aa23.83■■□□□ 1.41
SHMT1-207ENST00000580002 PRKRAO75569 313 aaKnown RBP23.83■■□□□ 1.41
SHMT1-207ENST00000580002 HIST1H1TP22492 207 aaPredicted RBP23.83■■□□□ 1.41
SHMT1-207ENST00000580002 OLR1P78380 273 aa23.83■■□□□ 1.41
SHMT1-207ENST00000580002 ZNF763Q0D2J5 394 aa23.83■■□□□ 1.41
SHMT1-207ENST00000580002 SLAMF1Q13291 335 aa23.83■■□□□ 1.41
SHMT1-207ENST00000580002 FAM180BQ6P0A1 224 aa23.83■■□□□ 1.41
SHMT1-207ENST00000580002 NUDT13Q86X67 352 aa23.83■■□□□ 1.41
SHMT1-207ENST00000580002 OR1L3Q8NH93 324 aa23.83■■□□□ 1.41
SHMT1-207ENST00000580002 CMTM5Q96DZ9 223 aa23.83■■□□□ 1.41
SHMT1-207ENST00000580002 KCNC2Q96PR1 638 aa23.83■■□□□ 1.41
SHMT1-207ENST00000580002 CENPKQ9BS16 269 aa23.83■■□□□ 1.41
SHMT1-207ENST00000580002 KCNH6Q9H252 994 aa23.83■■□□□ 1.41
SHMT1-207ENST00000580002 CLMPQ9H6B4 373 aa23.83■■□□□ 1.41
SHMT1-207ENST00000580002 TEX10Q9NXF1 929 aaPredicted RBP23.83■■□□□ 1.41
SHMT1-207ENST00000580002 FAM234BA2RU67 622 aa23.83■■□□□ 1.4
SHMT1-207ENST00000580002 B2RBV5 119 aa23.83■■□□□ 1.4
SHMT1-207ENST00000580002 TMEM150CB9EJG8 249 aa23.83■■□□□ 1.4
SHMT1-207ENST00000580002 D6RAR5 112 aa23.83■■□□□ 1.4
SHMT1-207ENST00000580002 PRDX6P30041 224 aa23.83■■□□□ 1.4
SHMT1-207ENST00000580002 MAPK12P53778 367 aa23.83■■□□□ 1.4
SHMT1-207ENST00000580002 HNRNPH2P55795 449 aaKnown RBP23.83■■□□□ 1.4
SHMT1-207ENST00000580002 PLIN5Q00G26 463 aa23.83■■□□□ 1.4
SHMT1-207ENST00000580002 C2orf80Q0P641 193 aa23.83■■□□□ 1.4
SHMT1-207ENST00000580002 FAM174BQ3ZCQ3 159 aa23.83■■□□□ 1.4
SHMT1-207ENST00000580002 TIGD2Q4W5G0 525 aa23.83■■□□□ 1.4
SHMT1-207ENST00000580002 STPG1Q5TH74 334 aa23.83■■□□□ 1.4
SHMT1-207ENST00000580002 SPDL1Q96EA4 605 aa23.83■■□□□ 1.4
SHMT1-207ENST00000580002 C10orf90Q96M02 699 aa23.83■■□□□ 1.4
SHMT1-207ENST00000580002 TBCDQ9BTW9 1192 aa23.83■■□□□ 1.4
SHMT1-207ENST00000580002 CHRNA10Q9GZZ6 450 aa23.83■■□□□ 1.4
SHMT1-207ENST00000580002 IRF2BPLQ9H1B7 796 aa23.83■■□□□ 1.4
SHMT1-207ENST00000580002 RAPGEFL1Q9UHV5 662 aa23.83■■□□□ 1.4
SHMT1-207ENST00000580002 ZNF292O60281 2723 aa23.82■■□□□ 1.4
SHMT1-207ENST00000580002 GABRR3A8MPY1 467 aa23.82■■□□□ 1.4
SHMT1-207ENST00000580002 SRPX2O60687 465 aaPredicted RBP23.82■■□□□ 1.4
SHMT1-207ENST00000580002 SLC34A2O95436 690 aa23.82■■□□□ 1.4
SHMT1-207ENST00000580002 ATXN8OSP0DMR3 200 aa23.82■■□□□ 1.4
SHMT1-207ENST00000580002 PIM1P11309 404 aaPredicted RBP23.82■■□□□ 1.4
SHMT1-207ENST00000580002 EFNA1P20827 205 aaPredicted RBP23.82■■□□□ 1.4
SHMT1-207ENST00000580002 CALB2P22676 271 aa23.82■■□□□ 1.4
SHMT1-207ENST00000580002 PDX1P52945 283 aa23.82■■□□□ 1.4
SHMT1-207ENST00000580002 RUNX2Q13950 521 aa23.82■■□□□ 1.4
SHMT1-207ENST00000580002 RCAN2Q14206 197 aa23.82■■□□□ 1.4
SHMT1-207ENST00000580002 HERC3Q15034 1050 aa23.82■■□□□ 1.4
SHMT1-207ENST00000580002 ZNF385BQ569K4 471 aa23.82■■□□□ 1.4
SHMT1-207ENST00000580002 PAGE3Q5JUK9 113 aa23.82■■□□□ 1.4
SHMT1-207ENST00000580002 PHF19Q5T6S3 580 aa23.82■■□□□ 1.4
SHMT1-207ENST00000580002 FAM71E1Q6IPT2 247 aa23.82■■□□□ 1.4
SHMT1-207ENST00000580002 YTHDF3Q7Z739 585 aaKnown RBP23.82■■□□□ 1.4
SHMT1-207ENST00000580002 IRAK4Q9NWZ3 460 aa23.82■■□□□ 1.4
SHMT1-207ENST00000580002 C5AR2Q9P296 337 aa23.82■■□□□ 1.4
SHMT1-207ENST00000580002 MAP10Q9P2G4 905 aa23.82■■□□□ 1.4
SHMT1-207ENST00000580002 FBXW2Q9UKT8 454 aa23.82■■□□□ 1.4
SHMT1-207ENST00000580002 COL5A1P20908 1838 aaPredicted RBP23.81■■□□□ 1.4
SHMT1-207ENST00000580002 SLC25A3Q00325 362 aa23.81■■□□□ 1.4
SHMT1-207ENST00000580002 PGS1Q32NB8 556 aa23.81■■□□□ 1.4
SHMT1-207ENST00000580002 PAGE2Q7Z2X7 111 aa23.81■■□□□ 1.4
SHMT1-207ENST00000580002 PARP9Q8IXQ6 854 aa23.81■■□□□ 1.4
SHMT1-207ENST00000580002 CARFQ8N187 725 aa23.81■■□□□ 1.4
SHMT1-207ENST00000580002 KIF2BQ8N4N8 673 aa23.81■■□□□ 1.4
SHMT1-207ENST00000580002 ZNF655Q8N720 491 aaPredicted RBP23.81■■□□□ 1.4
SHMT1-207ENST00000580002 OR5T3Q8NGG3 340 aa23.81■■□□□ 1.4
SHMT1-207ENST00000580002 MAPKAP1Q9BPZ7 522 aa23.81■■□□□ 1.4
SHMT1-207ENST00000580002 ATG4BQ9Y4P1 393 aa23.81■■□□□ 1.4
SHMT1-207ENST00000580002 ASB4Q9Y574 426 aa23.81■■□□□ 1.4
SHMT1-207ENST00000580002 ZSCAN9O15535 394 aaPredicted RBP23.8■■□□□ 1.4
SHMT1-207ENST00000580002 KIAA0754O94854 1291 aa23.8■■□□□ 1.4
SHMT1-207ENST00000580002 FAM58BPP0C7Q3 252 aa23.8■■□□□ 1.4
SHMT1-207ENST00000580002 LAMP1P11279 417 aa23.8■■□□□ 1.4
SHMT1-207ENST00000580002 ALOX12P18054 663 aa23.8■■□□□ 1.4
SHMT1-207ENST00000580002 SPIDRQ14159 915 aa23.8■■□□□ 1.4
SHMT1-207ENST00000580002 TLR1Q15399 786 aa23.8■■□□□ 1.4
SHMT1-207ENST00000580002 REP15Q6BDI9 236 aa23.8■■□□□ 1.4
SHMT1-207ENST00000580002 MRM1Q6IN84 353 aaKnown RBP23.8■■□□□ 1.4
SHMT1-207ENST00000580002 SLC2A7Q6PXP3 512 aa23.8■■□□□ 1.4
SHMT1-207ENST00000580002 RBM15BQ8NDT2 890 aaKnown RBP23.8■■□□□ 1.4
SHMT1-207ENST00000580002 OR9A4Q8NGU2 314 aa23.8■■□□□ 1.4
SHMT1-207ENST00000580002 N4BP2L2Q92802 583 aaPredicted RBP23.8■■□□□ 1.4
SHMT1-207ENST00000580002 MYNNQ9NPC7 610 aa23.8■■□□□ 1.4
SHMT1-207ENST00000580002 OCIAD1Q9NX40 245 aa23.8■■□□□ 1.4
SHMT1-207ENST00000580002 TAS2R1Q9NYW7 299 aa23.8■■□□□ 1.4
SHMT1-207ENST00000580002 SLAMF8Q9P0V8 285 aa23.8■■□□□ 1.4
SHMT1-207ENST00000580002 ADAM29Q9UKF5 820 aa23.8■■□□□ 1.4
SHMT1-207ENST00000580002 NAALAD2Q9Y3Q0 740 aa23.8■■□□□ 1.4
SHMT1-207ENST00000580002 SGK494L7N484 410 aa23.8■■□□□ 1.4
SHMT1-207ENST00000580002 GP1BAP07359 652 aa23.8■■□□□ 1.4
SHMT1-207ENST00000580002 KCNK10P57789 538 aa23.8■■□□□ 1.4
SHMT1-207ENST00000580002 C16orf72Q14CZ0 275 aa23.8■■□□□ 1.4
SHMT1-207ENST00000580002 C18orf63Q68DL7 685 aa23.8■■□□□ 1.4
SHMT1-207ENST00000580002 TMEM132CQ8N3T6 1108 aa23.8■■□□□ 1.4
SHMT1-207ENST00000580002 METTL27Q8N6F8 245 aaPredicted RBP23.8■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms