RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 RGS7P49802 495 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 TMEM50BP56557 158 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 DCDC1P59894 354 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 CACNG1Q06432 222 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 SGCGQ13326 291 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 PKN2Q16513 984 aaKnown RBP4.37□□□□□ -1.71
NUP88-213ENST00000576862 TAZQ16635 292 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 ZNF343Q6P1L6 599 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 PAQR6Q6TCH4 344 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 NRARPQ7Z6K4 114 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 APCDD1Q8J025 514 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 AQP11Q8NBQ7 271 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 MSANTD4Q8NCY6 345 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 SPATA18Q8TC71 538 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 GIMAP1Q8WWP7 306 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 NSMAFQ92636 917 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 P2RX5Q93086 422 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 CNRIP1Q96F85 164 aaPredicted RBP4.37□□□□□ -1.71
NUP88-213ENST00000576862 PGM2Q96G03 612 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 RADILQ96JH8 1075 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 BTBD9Q96Q07 612 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 DNAI2Q9GZS0 605 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 RIMS4Q9H426 269 aaPredicted RBP4.37□□□□□ -1.71
NUP88-213ENST00000576862 ZCCHC17Q9NP64 241 aaKnown RBP4.37□□□□□ -1.71
NUP88-213ENST00000576862 TEX10Q9NXF1 929 aaPredicted RBP4.37□□□□□ -1.71
NUP88-213ENST00000576862 GIMAP2Q9UG22 337 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 KLK13Q9UKR3 277 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 WIPI2Q9Y4P8 454 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 KDM5AP29375 1690 aaKnown RBP4.37□□□□□ -1.71
NUP88-213ENST00000576862 QRICH2Q9H0J4 1663 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 IL16Q14005 1332 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 POLR3AO14802 1390 aaPredicted RBP4.37□□□□□ -1.71
NUP88-213ENST00000576862 NSD2O96028 1365 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 CPSF1Q10570 1443 aaKnown RBP4.37□□□□□ -1.71
NUP88-213ENST00000576862 PTCH1Q13635 1447 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 SMG6Q86US8 1419 aaKnown RBP4.37□□□□□ -1.71
NUP88-213ENST00000576862 COL2A1P02458 1487 aaPredicted RBP4.37□□□□□ -1.71
NUP88-213ENST00000576862 CEP170BQ9Y4F5 1589 aaPredicted RBP4.36□□□□□ -1.71
NUP88-213ENST00000576862 C3P01024 1663 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 SETD1AO15047 1707 aaKnown RBP4.36□□□□□ -1.71
NUP88-213ENST00000576862 UBR1Q8IWV7 1749 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 IGHV3OR16-10A0A075B7F0 116 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 ANXA2P2A6NMY6 339 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 NPIPB9F8W1W9 429 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 P4HA1P13674 534 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 MYL6BP14649 208 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 RBMS1P29558 406 aaKnown RBP4.36□□□□□ -1.71
NUP88-213ENST00000576862 CETN2P41208 172 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 NPY4RP50391 375 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 MFAP3P55082 362 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 ELAVL2Q12926 359 aaKnown RBP4.36□□□□□ -1.71
NUP88-213ENST00000576862 WDR43Q15061 677 aaKnown RBP eCLIP4.36□□□□□ -1.71
NUP88-213ENST00000576862 RBBP7Q16576 425 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 MTHFSDQ2M296 383 aaKnown RBP4.36□□□□□ -1.71
NUP88-213ENST00000576862 FAM174BQ3ZCQ3 159 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 LCE3CQ5T5A8 94 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 NOTUMQ6P988 496 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 C16orf87Q6PH81 154 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 CCDC60Q8IWA6 550 aaPredicted RBP4.36□□□□□ -1.71
NUP88-213ENST00000576862 GBP7Q8N8V2 638 aaPredicted RBP4.36□□□□□ -1.71
NUP88-213ENST00000576862 IQUBQ8NA54 791 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 OR5T2Q8NGG2 359 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 OCC1Q8TAD7 63 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 FAM222BQ8WU58 562 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 GDAP1L1Q96MZ0 367 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 BAG1Q99933 345 aaPredicted RBP4.36□□□□□ -1.71
NUP88-213ENST00000576862 PYGO2Q9BRQ0 406 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 ADPGKQ9BRR6 497 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 TRIM6Q9C030 488 aaPredicted RBP4.36□□□□□ -1.71
NUP88-213ENST00000576862 SNX25Q9H3E2 840 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 TBC1D13Q9NVG8 400 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 CHCHD3Q9NX63 227 aaKnown RBP4.36□□□□□ -1.71
NUP88-213ENST00000576862 PKD2L2Q9NZM6 624 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 TBK1Q9UHD2 729 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 NUDCQ9Y266 331 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 NOTCH3Q9UM47 2321 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 PPIP5K1Q6PFW1 1433 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 ATP7BP35670 1465 aa4.36□□□□□ -1.71
NUP88-213ENST00000576862 ADAMTSL3P82987 1691 aa4.35□□□□□ -1.71
NUP88-213ENST00000576862 PCNX3Q9H6A9 2034 aa4.35□□□□□ -1.71
NUP88-213ENST00000576862 LOC105371242A0A075B767 164 aa4.35□□□□□ -1.71
NUP88-213ENST00000576862 A0A1W2PPW3 197 aa4.35□□□□□ -1.71
NUP88-213ENST00000576862 GLTPD2A6NH11 291 aa4.35□□□□□ -1.71
NUP88-213ENST00000576862 F8VVB4 439 aa4.35□□□□□ -1.71
NUP88-213ENST00000576862 F8VWA3 439 aa4.35□□□□□ -1.71
NUP88-213ENST00000576862 G3V2L1 256 aa4.35□□□□□ -1.71
NUP88-213ENST00000576862 H7C0S8 307 aa4.35□□□□□ -1.71
NUP88-213ENST00000576862 STAG3L1P0CL83 205 aa4.35□□□□□ -1.71
NUP88-213ENST00000576862 DESP17661 470 aa4.35□□□□□ -1.71
NUP88-213ENST00000576862 MUTP22033 750 aa4.35□□□□□ -1.71
NUP88-213ENST00000576862 SFTPDP35247 375 aa4.35□□□□□ -1.71
NUP88-213ENST00000576862 DSCR10P59022 87 aa4.35□□□□□ -1.71
NUP88-213ENST00000576862 COX10Q12887 443 aa4.35□□□□□ -1.71
NUP88-213ENST00000576862 TAF7Q15545 349 aaPredicted RBP4.35□□□□□ -1.71
NUP88-213ENST00000576862 SLC1A5Q15758 541 aa4.35□□□□□ -1.71
NUP88-213ENST00000576862 FAM166AQ6J272 317 aa4.35□□□□□ -1.71
NUP88-213ENST00000576862 UNC5DQ6UXZ4 953 aa4.35□□□□□ -1.71
NUP88-213ENST00000576862 MCM10Q7L590 875 aa4.35□□□□□ -1.71
NUP88-213ENST00000576862 ADCK2Q7Z695 626 aa4.35□□□□□ -1.71
NUP88-213ENST00000576862 AGAP4Q96P64 663 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms