RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 ADPRMQ3LIE5 342 aa14.15□□□□□ -0.14
VPS39-210ENST00000568357 PAGE2BQ5JRK9 111 aa14.15□□□□□ -0.14
VPS39-210ENST00000568357 IRAK1BP1Q5VVH5 260 aa14.15□□□□□ -0.14
VPS39-210ENST00000568357 HIST2H2AA3Q6FI13 130 aa14.15□□□□□ -0.14
VPS39-210ENST00000568357 ADGRD1Q6QNK2 874 aa14.15□□□□□ -0.14
VPS39-210ENST00000568357 LINC00696Q6ZRV3 163 aa14.15□□□□□ -0.14
VPS39-210ENST00000568357 TAOK1Q7L7X3 1001 aa14.15□□□□□ -0.14
VPS39-210ENST00000568357 CA13Q8N1Q1 262 aa14.15□□□□□ -0.14
VPS39-210ENST00000568357 ZADH2Q8N4Q0 377 aa14.15□□□□□ -0.14
VPS39-210ENST00000568357 BRIX1Q8TDN6 353 aaKnown RBP14.15□□□□□ -0.14
VPS39-210ENST00000568357 TSLPQ969D9 159 aa14.15□□□□□ -0.14
VPS39-210ENST00000568357 GAL3ST3Q96A11 431 aa14.15□□□□□ -0.14
VPS39-210ENST00000568357 MIB2Q96AX9 1013 aa14.15□□□□□ -0.14
VPS39-210ENST00000568357 QRFPRQ96P65 431 aa14.15□□□□□ -0.14
VPS39-210ENST00000568357 F2RL3Q96RI0 385 aa14.15□□□□□ -0.14
VPS39-210ENST00000568357 WDR77Q9BQA1 342 aaPredicted RBP14.15□□□□□ -0.14
VPS39-210ENST00000568357 REXO4Q9GZR2 422 aaKnown RBP14.15□□□□□ -0.14
VPS39-210ENST00000568357 RIC8BQ9NVN3 520 aa14.15□□□□□ -0.14
VPS39-210ENST00000568357 CPSF2Q9P2I0 782 aaKnown RBP14.15□□□□□ -0.14
VPS39-210ENST00000568357 CSAG2Q9Y5P2 127 aa14.15□□□□□ -0.14
VPS39-210ENST00000568357 SCN3AQ9NY46 2000 aa14.14□□□□□ -0.15
VPS39-210ENST00000568357 MAGEB17A8MXT2 336 aa14.14□□□□□ -0.15
VPS39-210ENST00000568357 RBP1P09455 135 aa14.14□□□□□ -0.15
VPS39-210ENST00000568357 ITGAMP11215 1152 aa14.14□□□□□ -0.15
VPS39-210ENST00000568357 COL6A2P12110 1019 aa14.14□□□□□ -0.15
VPS39-210ENST00000568357 PLA2G16P53816 162 aa14.14□□□□□ -0.15
VPS39-210ENST00000568357 PRR30Q53SZ7 412 aaPredicted RBP14.14□□□□□ -0.15
VPS39-210ENST00000568357 TEX35Q5T0J7 233 aa14.14□□□□□ -0.15
VPS39-210ENST00000568357 ABHD17CQ6PCB6 329 aa14.14□□□□□ -0.15
VPS39-210ENST00000568357 ISLR2Q6UXK2 745 aa14.14□□□□□ -0.15
VPS39-210ENST00000568357 TIFABQ6ZNK6 161 aa14.14□□□□□ -0.15
VPS39-210ENST00000568357 Q6ZS92 163 aa14.14□□□□□ -0.15
VPS39-210ENST00000568357 UBE3DQ7Z6J8 389 aa14.14□□□□□ -0.15
VPS39-210ENST00000568357 LAS2Q8IYD9 372 aa14.14□□□□□ -0.15
VPS39-210ENST00000568357 TMEM151AQ8N4L1 468 aa14.14□□□□□ -0.15
VPS39-210ENST00000568357 OR2L5Q8NG80 312 aa14.14□□□□□ -0.15
VPS39-210ENST00000568357 ZNF473Q8WTR7 871 aaKnown RBP14.14□□□□□ -0.15
VPS39-210ENST00000568357 TM9SF4Q92544 642 aa14.14□□□□□ -0.15
VPS39-210ENST00000568357 FAR2Q96K12 515 aa14.14□□□□□ -0.15
VPS39-210ENST00000568357 LMF1Q96S06 567 aa14.14□□□□□ -0.15
VPS39-210ENST00000568357 TUBB6Q9BUF5 446 aa14.14□□□□□ -0.15
VPS39-210ENST00000568357 SLAMF7Q9NQ25 335 aa14.14□□□□□ -0.15
VPS39-210ENST00000568357 PRDM7Q9NQW5 492 aa14.14□□□□□ -0.15
VPS39-210ENST00000568357 PTGFRNQ9P2B2 879 aa14.14□□□□□ -0.15
VPS39-210ENST00000568357 B3GNT3Q9Y2A9 372 aa14.14□□□□□ -0.15
VPS39-210ENST00000568357 CREBBPQ92793 2442 aa14.13□□□□□ -0.15
VPS39-210ENST00000568357 E2F3O00716 465 aa14.13□□□□□ -0.15
VPS39-210ENST00000568357 PRMT3O60678 531 aa14.13□□□□□ -0.15
VPS39-210ENST00000568357 SBK3P0C264 359 aa14.13□□□□□ -0.15
VPS39-210ENST00000568357 RNH1P13489 461 aaKnown RBP14.13□□□□□ -0.15
VPS39-210ENST00000568357 ICAM2P13598 275 aa14.13□□□□□ -0.15
VPS39-210ENST00000568357 SOX11P35716 441 aa14.13□□□□□ -0.15
VPS39-210ENST00000568357 MFAP5Q13361 173 aa14.13□□□□□ -0.15
VPS39-210ENST00000568357 GTF2H2Q13888 395 aa14.13□□□□□ -0.15
VPS39-210ENST00000568357 INPP5JQ15735 1006 aaPredicted RBP14.13□□□□□ -0.15
VPS39-210ENST00000568357 SFT2D3Q587I9 215 aa14.13□□□□□ -0.15
VPS39-210ENST00000568357 CRB2Q5IJ48 1285 aa14.13□□□□□ -0.15
VPS39-210ENST00000568357 LGSNQ5TDP6 509 aa14.13□□□□□ -0.15
VPS39-210ENST00000568357 B3GNTL1Q67FW5 361 aaPredicted RBP14.13□□□□□ -0.15
VPS39-210ENST00000568357 GTF2H2CQ6P1K8 395 aa14.13□□□□□ -0.15
VPS39-210ENST00000568357 MED27Q6P2C8 311 aa14.13□□□□□ -0.15
VPS39-210ENST00000568357 RIPOR1Q6ZS17 1223 aa14.13□□□□□ -0.15
VPS39-210ENST00000568357 CUZD1Q86UP6 607 aa14.13□□□□□ -0.15
VPS39-210ENST00000568357 SIRT6Q8N6T7 355 aa14.13□□□□□ -0.15
VPS39-210ENST00000568357 PTGR2Q8N8N7 351 aaPredicted RBP14.13□□□□□ -0.15
VPS39-210ENST00000568357 EIF1ADQ8N9N8 165 aaKnown RBP14.13□□□□□ -0.15
VPS39-210ENST00000568357 CATSPER1Q8NEC5 780 aa14.13□□□□□ -0.15
VPS39-210ENST00000568357 OR7G3Q8NG95 312 aa14.13□□□□□ -0.15
VPS39-210ENST00000568357 CPT1CQ8TCG5 803 aa14.13□□□□□ -0.15
VPS39-210ENST00000568357 PHF21BQ96EK2 531 aa14.13□□□□□ -0.15
VPS39-210ENST00000568357 SCYL1Q96KG9 808 aa14.13□□□□□ -0.15
VPS39-210ENST00000568357 PTCHD1Q96NR3 888 aa14.13□□□□□ -0.15
VPS39-210ENST00000568357 XPR1Q9UBH6 696 aa14.13□□□□□ -0.15
VPS39-210ENST00000568357 PLEKHB1Q9UF11 243 aaPredicted RBP14.13□□□□□ -0.15
VPS39-210ENST00000568357 C19orf25Q9UFG5 118 aaPredicted RBP14.13□□□□□ -0.15
VPS39-210ENST00000568357 ANGPTL3Q9Y5C1 460 aa14.13□□□□□ -0.15
VPS39-210ENST00000568357 TNPO3Q9Y5L0 923 aaKnown RBP14.13□□□□□ -0.15
VPS39-210ENST00000568357 SH3BGRLO75368 114 aa14.12□□□□□ -0.15
VPS39-210ENST00000568357 TGFB1P01137 390 aa14.12□□□□□ -0.15
VPS39-210ENST00000568357 PCNAP12004 261 aa14.12□□□□□ -0.15
VPS39-210ENST00000568357 MAOAP21397 527 aa14.12□□□□□ -0.15
VPS39-210ENST00000568357 JAK1P23458 1154 aa14.12□□□□□ -0.15
VPS39-210ENST00000568357 ACTN3Q08043 901 aaPredicted RBP14.12□□□□□ -0.15
VPS39-210ENST00000568357 TSNAXIP1Q2TAA8 658 aa14.12□□□□□ -0.15
VPS39-210ENST00000568357 PLAG1Q6DJT9 500 aa14.12□□□□□ -0.15
VPS39-210ENST00000568357 GRHL2Q6ISB3 625 aa14.12□□□□□ -0.15
VPS39-210ENST00000568357 TRIM40Q6P9F5 258 aa14.12□□□□□ -0.15
VPS39-210ENST00000568357 GOLGA7Q7Z5G4 137 aa14.12□□□□□ -0.15
VPS39-210ENST00000568357 RNF175Q8N4F7 328 aa14.12□□□□□ -0.15
VPS39-210ENST00000568357 DNAJB14Q8TBM8 379 aa14.12□□□□□ -0.15
VPS39-210ENST00000568357 UBE2E3Q969T4 207 aa14.12□□□□□ -0.15
VPS39-210ENST00000568357 C19orf60Q96EN9 201 aa14.12□□□□□ -0.15
VPS39-210ENST00000568357 MRPL57Q9BQC6 102 aaKnown RBP14.12□□□□□ -0.15
VPS39-210ENST00000568357 NPLQ9BXD5 320 aaPredicted RBP14.12□□□□□ -0.15
VPS39-210ENST00000568357 MS4A8Q9BY19 250 aa14.12□□□□□ -0.15
VPS39-210ENST00000568357 IPPKQ9H8X2 491 aa14.12□□□□□ -0.15
VPS39-210ENST00000568357 ACTR8Q9H981 624 aa14.12□□□□□ -0.15
VPS39-210ENST00000568357 NECTIN3Q9NQS3 549 aa14.12□□□□□ -0.15
VPS39-210ENST00000568357 PLA2G3Q9NZ20 509 aa14.12□□□□□ -0.15
VPS39-210ENST00000568357 RNF11Q9Y3C5 154 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms