RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 CSMD2Q7Z408 3487 aa16■□□□□ 0.15
CLN3-216ENST00000565316 E7ESA3 106 aa15.99■□□□□ 0.15
CLN3-216ENST00000565316 C1GALT1C1LP0DN25 315 aa15.99■□□□□ 0.15
CLN3-216ENST00000565316 COX6B1P14854 86 aa15.99■□□□□ 0.15
CLN3-216ENST00000565316 ZNF24P17028 368 aa15.99■□□□□ 0.15
CLN3-216ENST00000565316 GNAZP19086 355 aa15.99■□□□□ 0.15
CLN3-216ENST00000565316 SAT1P21673 171 aa15.99■□□□□ 0.15
CLN3-216ENST00000565316 STXBP1P61764 594 aaKnown RBP15.99■□□□□ 0.15
CLN3-216ENST00000565316 ZNF460Q14592 562 aa15.99■□□□□ 0.15
CLN3-216ENST00000565316 CDSNQ15517 529 aa15.99■□□□□ 0.15
CLN3-216ENST00000565316 TSNQ15631 228 aaKnown RBP15.99■□□□□ 0.15
CLN3-216ENST00000565316 GDF7Q7Z4P5 450 aa15.99■□□□□ 0.15
CLN3-216ENST00000565316 FGD2Q7Z6J4 655 aa15.99■□□□□ 0.15
CLN3-216ENST00000565316 ADAMTSL2Q86TH1 951 aa15.99■□□□□ 0.15
CLN3-216ENST00000565316 DOLPP1Q86YN1 238 aa15.99■□□□□ 0.15
CLN3-216ENST00000565316 ANKMY2Q8IV38 441 aa15.99■□□□□ 0.15
CLN3-216ENST00000565316 CEP97Q8IW35 865 aa15.99■□□□□ 0.15
CLN3-216ENST00000565316 SCUBE1Q8IWY4 988 aa15.99■□□□□ 0.15
CLN3-216ENST00000565316 KLHL7Q8IXQ5 586 aa15.99■□□□□ 0.15
CLN3-216ENST00000565316 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.99■□□□□ 0.15
CLN3-216ENST00000565316 CPSF7Q8N684 471 aaKnown RBP15.99■□□□□ 0.15
CLN3-216ENST00000565316 POGLUT1Q8NBL1 392 aa15.99■□□□□ 0.15
CLN3-216ENST00000565316 B3GNT7Q8NFL0 401 aa15.99■□□□□ 0.15
CLN3-216ENST00000565316 TTLQ8NG68 377 aa15.99■□□□□ 0.15
CLN3-216ENST00000565316 PHF10Q8WUB8 498 aaKnown RBP15.99■□□□□ 0.15
CLN3-216ENST00000565316 GAL3ST3Q96A11 431 aa15.99■□□□□ 0.15
CLN3-216ENST00000565316 RHBDF1Q96CC6 855 aa15.99■□□□□ 0.15
CLN3-216ENST00000565316 SEC16BQ96JE7 1060 aa15.99■□□□□ 0.15
CLN3-216ENST00000565316 NPLQ9BXD5 320 aaPredicted RBP15.99■□□□□ 0.15
CLN3-216ENST00000565316 TRIM8Q9BZR9 551 aa15.99■□□□□ 0.15
CLN3-216ENST00000565316 RHBGQ9H310 441 aa15.99■□□□□ 0.15
CLN3-216ENST00000565316 NT5DC2Q9H857 520 aa15.99■□□□□ 0.15
CLN3-216ENST00000565316 POPDC3Q9HBV1 291 aa15.99■□□□□ 0.15
CLN3-216ENST00000565316 TRMT1Q9NXH9 659 aaKnown RBP15.99■□□□□ 0.15
CLN3-216ENST00000565316 CTNNAL1Q9UBT7 734 aa15.99■□□□□ 0.15
CLN3-216ENST00000565316 ASB1Q9Y576 335 aa15.99■□□□□ 0.15
CLN3-216ENST00000565316 CCDC168Q8NDH2 2452 aa15.99■□□□□ 0.15
CLN3-216ENST00000565316 LRIT2A6NDA9 550 aa15.98■□□□□ 0.15
CLN3-216ENST00000565316 A8MUA0 341 aa15.98■□□□□ 0.15
CLN3-216ENST00000565316 FCHO1O14526 889 aa15.98■□□□□ 0.15
CLN3-216ENST00000565316 ADAM10O14672 748 aa15.98■□□□□ 0.15
CLN3-216ENST00000565316 H2AFYO75367 372 aaKnown RBP15.98■□□□□ 0.15
CLN3-216ENST00000565316 WISP3O95389 354 aaPredicted RBP15.98■□□□□ 0.15
CLN3-216ENST00000565316 CLDN14O95500 239 aa15.98■□□□□ 0.15
CLN3-216ENST00000565316 GSTM2P28161 218 aa15.98■□□□□ 0.15
CLN3-216ENST00000565316 GDF5P43026 501 aa15.98■□□□□ 0.15
CLN3-216ENST00000565316 GPR143P51810 404 aa15.98■□□□□ 0.15
CLN3-216ENST00000565316 BTN3A2P78410 334 aa15.98■□□□□ 0.15
CLN3-216ENST00000565316 ILF2Q12905 390 aaKnown RBP15.98■□□□□ 0.15
CLN3-216ENST00000565316 RUNX2Q13950 521 aa15.98■□□□□ 0.15
CLN3-216ENST00000565316 FASTKD3Q14CZ7 662 aaKnown RBP15.98■□□□□ 0.15
CLN3-216ENST00000565316 C18orf21Q32NC0 220 aaPredicted RBP15.98■□□□□ 0.15
CLN3-216ENST00000565316 ADPRMQ3LIE5 342 aa15.98■□□□□ 0.15
CLN3-216ENST00000565316 TMIGD1Q6UXZ0 262 aa15.98■□□□□ 0.15
CLN3-216ENST00000565316 FBXO36Q8NEA4 188 aa15.98■□□□□ 0.15
CLN3-216ENST00000565316 AGAP11Q8TF27 550 aa15.98■□□□□ 0.15
CLN3-216ENST00000565316 TMEM125Q96AQ2 219 aa15.98■□□□□ 0.15
CLN3-216ENST00000565316 MS4A6EQ96DS6 147 aa15.98■□□□□ 0.15
CLN3-216ENST00000565316 QRFPRQ96P65 431 aa15.98■□□□□ 0.15
CLN3-216ENST00000565316 PHF12Q96QT6 1004 aa15.98■□□□□ 0.15
CLN3-216ENST00000565316 DMRTA2Q96SC8 542 aa15.98■□□□□ 0.15
CLN3-216ENST00000565316 EGFL8Q99944 293 aa15.98■□□□□ 0.15
CLN3-216ENST00000565316 PITHD1Q9GZP4 211 aaPredicted RBP15.98■□□□□ 0.15
CLN3-216ENST00000565316 KCNF1Q9H3M0 494 aa15.98■□□□□ 0.15
CLN3-216ENST00000565316 RHOJQ9H4E5 214 aa15.98■□□□□ 0.15
CLN3-216ENST00000565316 GPAMQ9HCL2 828 aa15.98■□□□□ 0.15
CLN3-216ENST00000565316 NSMCE4AQ9NXX6 385 aa15.98■□□□□ 0.15
CLN3-216ENST00000565316 E9PLN8 166 aa15.97■□□□□ 0.15
CLN3-216ENST00000565316 TGFBR3LH3BV60 316 aa15.97■□□□□ 0.15
CLN3-216ENST00000565316 WDR47O94967 919 aa15.97■□□□□ 0.15
CLN3-216ENST00000565316 TBX6O95947 436 aaPredicted RBP15.97■□□□□ 0.15
CLN3-216ENST00000565316 ABOP16442 354 aa15.97■□□□□ 0.15
CLN3-216ENST00000565316 HNRNPH1P31943 449 aaKnown RBP15.97■□□□□ 0.15
CLN3-216ENST00000565316 GGT5P36269 586 aa15.97■□□□□ 0.15
CLN3-216ENST00000565316 CLCN2P51788 898 aa15.97■□□□□ 0.15
CLN3-216ENST00000565316 HSD17B7P56937 341 aa15.97■□□□□ 0.15
CLN3-216ENST00000565316 HSF1Q00613 529 aa15.97■□□□□ 0.15
CLN3-216ENST00000565316 PDIA2Q13087 525 aaKnown RBP15.97■□□□□ 0.15
CLN3-216ENST00000565316 SLBPQ14493 270 aaKnown RBP eCLIP15.97■□□□□ 0.15
CLN3-216ENST00000565316 ZNF295-AS1Q8N0V1 137 aa15.97■□□□□ 0.15
CLN3-216ENST00000565316 MTFMTQ96DP5 389 aaKnown RBP15.97■□□□□ 0.15
CLN3-216ENST00000565316 VPS39Q96JC1 886 aa15.97■□□□□ 0.15
CLN3-216ENST00000565316 PDLIM2Q96JY6 352 aa15.97■□□□□ 0.15
CLN3-216ENST00000565316 FAR2Q96K12 515 aa15.97■□□□□ 0.15
CLN3-216ENST00000565316 CAPZA3Q96KX2 299 aa15.97■□□□□ 0.15
CLN3-216ENST00000565316 LURAP1Q96LR2 239 aa15.97■□□□□ 0.15
CLN3-216ENST00000565316 VKORC1Q9BQB6 163 aa15.97■□□□□ 0.15
CLN3-216ENST00000565316 CAPS2Q9BXY5 557 aa15.97■□□□□ 0.15
CLN3-216ENST00000565316 DERL2Q9GZP9 239 aa15.97■□□□□ 0.15
CLN3-216ENST00000565316 GPRC5BQ9NZH0 403 aa15.97■□□□□ 0.15
CLN3-216ENST00000565316 ZNF223Q9UK11 482 aaPredicted RBP15.97■□□□□ 0.15
CLN3-216ENST00000565316 KLF13Q9Y2Y9 288 aaPredicted RBP15.97■□□□□ 0.15
CLN3-216ENST00000565316 CELSR1Q9NYQ6 3014 aa15.97■□□□□ 0.15
CLN3-216ENST00000565316 ANKRD17O75179 2603 aaKnown RBP15.97■□□□□ 0.15
CLN3-216ENST00000565316 TRBV11-1A0A0K0K1C0 115 aa15.96■□□□□ 0.15
CLN3-216ENST00000565316 C19orf84I3L1E1 186 aa15.96■□□□□ 0.15
CLN3-216ENST00000565316 ZNHIT1O43257 154 aa15.96■□□□□ 0.15
CLN3-216ENST00000565316 CLEC3AO75596 197 aa15.96■□□□□ 0.15
CLN3-216ENST00000565316 MYO1DO94832 1006 aa15.96■□□□□ 0.15
CLN3-216ENST00000565316 SNRPB2P08579 225 aaKnown RBP15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms