RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 PRRG1O14668 218 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 SLC16A8O95907 504 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 IGFBP1P08833 259 aaPredicted RBP12.66□□□□□ -0.38
CLN3-210ENST00000563874 SRCP12931 536 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 TNFSF8P32971 234 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 CNR2P34972 360 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 LIMK1P53667 647 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 AP1S2P56377 157 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 GPNMBQ14956 572 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 ATCAYQ86WG3 371 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 RNF130Q86XS8 419 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 ZNF461Q8TAF7 563 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 SLC30A2Q9BRI3 323 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 RERGLQ9H628 205 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 TBC1D24Q9ULP9 559 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 BOLA1Q9Y3E2 137 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 TMEM88BA6NKF7 163 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 WWP2O00308 870 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 TFECO14948 347 aaPredicted RBP12.66□□□□□ -0.38
CLN3-210ENST00000563874 IDH3BO43837 385 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 DPM1O60762 260 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 GASTP01350 101 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 MAPK8P45983 427 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 SPINT3P49223 89 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 NKX3-2P78367 333 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 OLR1P78380 273 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 CYP4F8P98187 520 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 IRF3Q14653 427 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 DPY19L3Q6ZPD9 716 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 MMAAQ8IVH4 418 aaKnown RBP12.66□□□□□ -0.38
CLN3-210ENST00000563874 AUTS2Q8WXX7 1259 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 CLP1Q92989 425 aaKnown RBP12.66□□□□□ -0.38
CLN3-210ENST00000563874 VPS35Q96QK1 796 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 NDEL1Q9GZM8 345 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 ACER3Q9NUN7 267 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 ABCB8Q9NUT2 735 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 CLEC2DQ9UHP7 191 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 MUTYHQ9UIF7 546 aa12.66□□□□□ -0.38
CLN3-210ENST00000563874 PNMA8CA0A1B0GUJ8 204 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 SOX14O95416 240 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 SOAT1P35610 550 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 CDC42P60953 191 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 TAB1Q15750 504 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 SLC5A12Q1EHB4 618 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 ATAD3CQ5T2N8 411 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 GCNT6Q5T4J0 391 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 ANXA8L1Q5VT79 327 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 BCDIN3DQ7Z5W3 292 aaKnown RBP12.65□□□□□ -0.38
CLN3-210ENST00000563874 TMPRSS11BQ86T26 416 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 NPAS4Q8IUM7 802 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 CMTM8Q8IZV2 173 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 LYSMD1Q96S90 227 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 PKP4Q99569 1192 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 RRAGCQ9HB90 399 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 STOX2Q9P2F5 926 aaPredicted RBP12.65□□□□□ -0.38
CLN3-210ENST00000563874 ZNF282Q9UDV7 671 aaPredicted RBP12.65□□□□□ -0.38
CLN3-210ENST00000563874 ZNF221Q9UK13 617 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 CFL2Q9Y281 166 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 WBP11Q9Y2W2 641 aaKnown RBP12.65□□□□□ -0.38
CLN3-210ENST00000563874 KLK4Q9Y5K2 254 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 CCRL2O00421 344 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 TNFRSF21O75509 655 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 GADD45GO95257 159 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 CKMP06732 381 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 CHRM5P08912 532 aaPredicted RBP12.65□□□□□ -0.38
CLN3-210ENST00000563874 MPC1LP0DKB6 136 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 CHMP24386 653 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 RPS19P39019 145 aaKnown RBP12.65□□□□□ -0.38
CLN3-210ENST00000563874 VEPH1Q14D04 833 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 ZNF367Q7RTV3 350 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 SLC44A2Q8IWA5 706 aaPredicted RBP12.65□□□□□ -0.38
CLN3-210ENST00000563874 CHST14Q8NCH0 376 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 GPR151Q8TDV0 419 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 YME1L1Q96TA2 773 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 SMG9Q9H0W8 520 aaKnown RBP12.65□□□□□ -0.38
CLN3-210ENST00000563874 MOV10Q9HCE1 1003 aaKnown RBP12.65□□□□□ -0.38
CLN3-210ENST00000563874 KLHL42Q9P2K6 505 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 CORO2BQ9UQ03 480 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 PLK4O00444 970 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 CCNB2O95067 398 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 EIF2S1P05198 315 aaKnown RBP12.65□□□□□ -0.38
CLN3-210ENST00000563874 ZNF8P17098 575 aaPredicted RBP12.65□□□□□ -0.38
CLN3-210ENST00000563874 PPIBP23284 216 aaKnown RBP12.65□□□□□ -0.38
CLN3-210ENST00000563874 CST5P28325 142 aaPredicted RBP12.65□□□□□ -0.38
CLN3-210ENST00000563874 PBLDP30039 288 aaPredicted RBP12.65□□□□□ -0.38
CLN3-210ENST00000563874 HTR3AP46098 478 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 ASMTP46597 345 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 PXNP49023 591 aaPredicted RBP12.65□□□□□ -0.38
CLN3-210ENST00000563874 SNRPD1P62314 119 aaKnown RBP12.65□□□□□ -0.38
CLN3-210ENST00000563874 DAB2P98082 770 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 CDK6Q00534 326 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 MEF2AQ02078 507 aaPredicted RBP12.65□□□□□ -0.38
CLN3-210ENST00000563874 MXD1Q05195 221 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 SP140Q13342 867 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 PLEKHS1Q5SXH7 462 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 KLHL17Q6TDP4 642 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 Q6ZVL8 140 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 PEX5LQ8IYB4 626 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 OR6F1Q8NGZ6 308 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 ASZ1Q8WWH4 475 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms