RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 TRIB3Q96RU7 358 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 S1PR5Q9H228 398 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 SCOCQ9UIL1 159 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 RPS6KA6Q9UK32 745 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 PCTPQ9UKL6 214 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 PLCL2Q9UPR0 1127 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 PSME4Q14997 1843 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 WDR87Q6ZQQ6 2873 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 IGHV1OR15-9A0A0B4J2B8 117 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 hCG_2039718K7EN88 272 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 MATN2O00339 956 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 PEX11BO96011 259 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 ALOX5P09917 674 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 ZNF888P0CJ79 500 aaPredicted RBP8.85□□□□□ -0.99
VPS39-205ENST00000562258 BMP7P18075 431 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 MRPS35P82673 323 aaKnown RBP8.85□□□□□ -0.99
VPS39-205ENST00000562258 IYDQ6PHW0 289 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 COMMD6Q7Z4G1 85 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 PEX5LQ8IYB4 626 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 FBXL8Q96CD0 374 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 CCDC134Q9H6E4 229 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 ZSWIM8A7E2V4 1837 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 GPR89AB7ZAQ6 455 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 H0YGG7 62 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 CST1P01037 141 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 GPR89BP0CG08 455 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 ARNTP27540 789 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 KIR2DL1P43626 348 aaPredicted RBP8.84□□□□□ -0.99
VPS39-205ENST00000562258 ARF3P61204 181 aaPredicted RBP8.84□□□□□ -0.99
VPS39-205ENST00000562258 ZXDAP98168 799 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 TYSND1Q2T9J0 566 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 C14orf28Q4W4Y0 310 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 FAM83HQ6ZRV2 1179 aaPredicted RBP8.84□□□□□ -0.99
VPS39-205ENST00000562258 COMMD2Q86X83 199 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 OFCC1Q8IZS5 231 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 GHDCQ8N2G8 530 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 ZSCAN1Q8NBB4 408 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 DEFB124Q8NES8 71 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 DENND1AQ8TEH3 1009 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 SLC25A36Q96CQ1 311 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 APIPQ96GX9 242 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 NDEL1Q9GZM8 345 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 PCDHAC1Q9H158 963 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 Q9N2J8 555 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 SPATA7Q9P0W8 599 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 ACSL6Q9UKU0 697 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 AP4S1Q9Y587 144 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 PCDHGA4Q9Y5G9 962 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 DNMT3AQ9Y6K1 912 aaPredicted RBP8.84□□□□□ -0.99
VPS39-205ENST00000562258 TDRD15B5MCY1 1934 aaKnown RBP8.84□□□□□ -0.99
VPS39-205ENST00000562258 AKAP6Q13023 2319 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 PRSS51A0A1B0GVH4 220 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 PTGES3LE9PB15 166 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 VILLO15195 856 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 SCO2O43819 266 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 SCRG1O75711 98 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 PDE9AO76083 593 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 BCHEP06276 602 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 CEACAM5P06731 702 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 IMPA1P29218 277 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 EPS8Q12929 822 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 FAM69BQ5VUD6 431 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 REP15Q6BDI9 236 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 CDC73Q6P1J9 531 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 OR5K2Q8NHB8 316 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 SOX17Q9H6I2 414 aaPredicted RBP8.84□□□□□ -0.99
VPS39-205ENST00000562258 LDAHQ9H6V9 325 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 TMEM27Q9HBJ8 222 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 CORO2BQ9UQ03 480 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 MCIDASD6RGH6 385 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 TRIM38O00635 465 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 CD160O95971 181 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 HRH2P25021 359 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 PSMD4P55036 377 aaKnown RBP8.84□□□□□ -0.99
VPS39-205ENST00000562258 MC1RQ01726 317 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 ABHD18Q0P651 414 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 CLCA4Q14CN2 919 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 RABL3Q5HYI8 236 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 CASP12Q6UXS9 341 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 ARMC8Q8IUR7 673 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 GLB1L3Q8NCI6 653 aaPredicted RBP8.84□□□□□ -0.99
VPS39-205ENST00000562258 EGLN2Q96KS0 407 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 BIRC8Q96P09 236 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 TPT1P8Q9HAU6 139 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 PADI2Q9Y2J8 665 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 PI4KAP42356 2102 aa8.84□□□□□ -0.99
VPS39-205ENST00000562258 INTS1Q8N201 2190 aaKnown RBP8.84□□□□□ -0.99
VPS39-205ENST00000562258 C17orf113A0A1B0GUU1 675 aa8.83□□□□□ -1
VPS39-205ENST00000562258 DHRS12A0PJE2 317 aa8.83□□□□□ -1
VPS39-205ENST00000562258 M0QX08 132 aa8.83□□□□□ -1
VPS39-205ENST00000562258 ERN1O75460 977 aaKnown RBP8.83□□□□□ -1
VPS39-205ENST00000562258 HSMCR30P0CW71 290 aa8.83□□□□□ -1
VPS39-205ENST00000562258 UGT2B7P16662 529 aa8.83□□□□□ -1
VPS39-205ENST00000562258 TIA1P31483 386 aaKnown RBP eCLIP8.83□□□□□ -1
VPS39-205ENST00000562258 DPP6P42658 865 aa8.83□□□□□ -1
VPS39-205ENST00000562258 GPR19Q15760 415 aa8.83□□□□□ -1
VPS39-205ENST00000562258 WLSQ5T9L3 541 aa8.83□□□□□ -1
VPS39-205ENST00000562258 NDUFAF5Q5TEU4 345 aa8.83□□□□□ -1
VPS39-205ENST00000562258 SCAIQ8N9R8 606 aa8.83□□□□□ -1
VPS39-205ENST00000562258 OLIG1Q8TAK6 271 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms