RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 XKRXQ6PP77 449 aa10.88□□□□□ -0.67
USP3-220ENST00000561381 FGD2Q7Z6J4 655 aa10.88□□□□□ -0.67
USP3-220ENST00000561381 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.88□□□□□ -0.67
USP3-220ENST00000561381 CA13Q8N1Q1 262 aa10.88□□□□□ -0.67
USP3-220ENST00000561381 HORMAD2Q8N7B1 307 aa10.88□□□□□ -0.67
USP3-220ENST00000561381 TRPV3Q8NET8 790 aa10.88□□□□□ -0.67
USP3-220ENST00000561381 CAPZA3Q96KX2 299 aa10.88□□□□□ -0.67
USP3-220ENST00000561381 AIF1LQ9BQI0 150 aa10.88□□□□□ -0.67
USP3-220ENST00000561381 CHST11Q9NPF2 352 aa10.88□□□□□ -0.67
USP3-220ENST00000561381 PRDM9Q9NQV7 894 aa10.88□□□□□ -0.67
USP3-220ENST00000561381 ZFATQ9P243 1243 aa10.88□□□□□ -0.67
USP3-220ENST00000561381 MEMO1Q9Y316 297 aa10.88□□□□□ -0.67
USP3-220ENST00000561381 APCP25054 2843 aa10.88□□□□□ -0.67
USP3-220ENST00000561381 FAM95CA0A1B0GW59 222 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 TGFBR3LH3BV60 316 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 PSMD12O00232 456 aaPredicted RBP10.87□□□□□ -0.67
USP3-220ENST00000561381 MYO1DO94832 1006 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 SERPINA6P08185 405 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 COX6B1P14854 86 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 ABOP16442 354 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 ZNF24P17028 368 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 POU3F2P20265 443 aaPredicted RBP10.87□□□□□ -0.67
USP3-220ENST00000561381 ELAVL4P26378 380 aaKnown RBP10.87□□□□□ -0.67
USP3-220ENST00000561381 PPP2R1BP30154 601 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 HNRNPH1P31943 449 aaKnown RBP10.87□□□□□ -0.67
USP3-220ENST00000561381 PTGER1P34995 402 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 PTGER4P35408 488 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 RFC3P40938 356 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 KIR3DL1P43629 444 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 CYB561P49447 251 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 HNRNPFP52597 415 aaKnown RBP10.87□□□□□ -0.67
USP3-220ENST00000561381 MGAT5Q09328 741 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 RUNX2Q13950 521 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 TSNQ15631 228 aaKnown RBP10.87□□□□□ -0.67
USP3-220ENST00000561381 NIPAL1Q6NVV3 410 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 CEP97Q8IW35 865 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 ZNF295-AS1Q8N0V1 137 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 FAM98AQ8NCA5 519 aaKnown RBP10.87□□□□□ -0.67
USP3-220ENST00000561381 APCDD1LQ8NCL9 501 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 TMEM52Q8NDY8 209 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 AGAP11Q8TF27 550 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 PDLIM2Q96JY6 352 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 EGFL8Q99944 293 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 TRIM8Q9BZR9 551 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 TRIM31Q9BZY9 425 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 KCNF1Q9H3M0 494 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 RUBCNLQ9H714 662 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 TRIM45Q9H8W5 580 aaPredicted RBP10.87□□□□□ -0.67
USP3-220ENST00000561381 ZNF223Q9UK11 482 aaPredicted RBP10.87□□□□□ -0.67
USP3-220ENST00000561381 OARD1Q9Y530 152 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 ASB1Q9Y576 335 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 CLDN16Q9Y5I7 305 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 KCNE2Q9Y6J6 123 aa10.87□□□□□ -0.67
USP3-220ENST00000561381 TRBV11-1A0A0K0K1C0 115 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 URADA6NGE7 173 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 NCF1BA6NI72 391 aaPredicted RBP10.86□□□□□ -0.67
USP3-220ENST00000561381 USP27XA6NNY8 438 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 NCF1CA8MVU1 366 aaPredicted RBP10.86□□□□□ -0.67
USP3-220ENST00000561381 ADAM10O14672 748 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 WDR47O94967 919 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 SEC31AO94979 1220 aaKnown RBP10.86□□□□□ -0.67
USP3-220ENST00000561381 MLYCDO95822 493 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 C1GALT1C1LP0DN25 315 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 NCF1P14598 390 aaPredicted RBP10.86□□□□□ -0.67
USP3-220ENST00000561381 TCP1P17987 556 aaKnown RBP10.86□□□□□ -0.67
USP3-220ENST00000561381 TRHRP34981 398 aaPredicted RBP10.86□□□□□ -0.67
USP3-220ENST00000561381 MEOX1P50221 254 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 HLCSP50747 726 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 NR0B1P51843 470 aaKnown RBP10.86□□□□□ -0.67
USP3-220ENST00000561381 SMSP52788 366 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 ARL4CP56559 192 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 CDKL1Q00532 357 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 DR1Q01658 176 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 PDIA2Q13087 525 aaKnown RBP10.86□□□□□ -0.67
USP3-220ENST00000561381 FRG1Q14331 258 aaKnown RBP10.86□□□□□ -0.67
USP3-220ENST00000561381 FBXO48Q5FWF7 155 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 ADNP2Q6IQ32 1131 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 C16orf47Q6ZP98 133 aaPredicted RBP10.86□□□□□ -0.67
USP3-220ENST00000561381 SLCO4C1Q6ZQN7 724 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 GDF7Q7Z4P5 450 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 DOLPP1Q86YN1 238 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 CREG2Q8IUH2 290 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 SULF2Q8IWU5 870 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 SCUBE1Q8IWY4 988 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 GHDCQ8N2G8 530 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 SPATA6LQ8N4H0 392 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 NKAPQ8N5F7 415 aaKnown RBP10.86□□□□□ -0.67
USP3-220ENST00000561381 FBXO36Q8NEA4 188 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 RHBDF1Q96CC6 855 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 LRRC39Q96DD0 335 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 MTFMTQ96DP5 389 aaKnown RBP10.86□□□□□ -0.67
USP3-220ENST00000561381 DEFB126Q9BYW3 111 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 CLK4Q9HAZ1 481 aaKnown RBP10.86□□□□□ -0.67
USP3-220ENST00000561381 SMYD2Q9NRG4 433 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 PNO1Q9NRX1 252 aaKnown RBP10.86□□□□□ -0.67
USP3-220ENST00000561381 MOCS1Q9NZB8 636 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 CTNNAL1Q9UBT7 734 aa10.86□□□□□ -0.67
USP3-220ENST00000561381 CSMD2Q7Z408 3487 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 MYOCOSA0A1B0GUC4 107 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 FCHO1O14526 889 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms