RNA–Protein interactions for RNA: ENST00000554659.5

VTI1B-204, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VTI1B, Length 5,351 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-204ENST00000554659 PTPRCAPQ14761 206 aa13.48□□□□□ -0.25
VTI1B-204ENST00000554659 VMACQ2NL98 169 aa13.48□□□□□ -0.25
VTI1B-204ENST00000554659 CDKL4Q5MAI5 379 aa13.48□□□□□ -0.25
VTI1B-204ENST00000554659 NOXRED1Q6NXP6 359 aa13.48□□□□□ -0.25
VTI1B-204ENST00000554659 BLOC1S3Q6QNY0 202 aa13.48□□□□□ -0.25
VTI1B-204ENST00000554659 UMODL1-AS1Q8N2C9 162 aa13.48□□□□□ -0.25
VTI1B-204ENST00000554659 TFGQ92734 400 aaPredicted RBP13.48□□□□□ -0.25
VTI1B-204ENST00000554659 ZNF285Q96NJ3 590 aa13.48□□□□□ -0.25
VTI1B-204ENST00000554659 EPYCQ99645 322 aa13.48□□□□□ -0.25
VTI1B-204ENST00000554659 ASPNQ9BXN1 380 aa13.48□□□□□ -0.25
VTI1B-204ENST00000554659 MAGIXQ9H6Y5 334 aa13.48□□□□□ -0.25
VTI1B-204ENST00000554659 CENPMQ9NSP4 180 aa13.48□□□□□ -0.25
VTI1B-204ENST00000554659 EMC3Q9P0I2 261 aa13.48□□□□□ -0.25
VTI1B-204ENST00000554659 CDH10Q9Y6N8 788 aa13.48□□□□□ -0.25
VTI1B-204ENST00000554659 CH25HO95992 272 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 CSF2P04141 144 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 MATN1P21941 496 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 CXCR1P25024 350 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 ACTR1BP42025 376 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 SLC9A3P48764 834 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 CLCNKAP51800 687 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 ACTR1AP61163 376 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 OTOP2Q7RTS6 562 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 PRSS58Q8IYP2 241 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 ZNF101Q8IZC7 436 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 OR9A1PQ8NGU1 263 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 JSRP1Q96MG2 331 aaPredicted RBP13.47□□□□□ -0.25
VTI1B-204ENST00000554659 TTYH2Q9BSA4 534 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 DOHHQ9BU89 302 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 GTPBP2Q9BX10 602 aaKnown RBP13.47□□□□□ -0.25
VTI1B-204ENST00000554659 HCN2Q9UL51 889 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 HSPE1-MOB4S4R3N1 261 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 SLC16A5O15375 505 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 F2P00734 622 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 FNTBP49356 437 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 SEC13P55735 322 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 HNRNPA0Q13151 305 aaKnown RBP13.47□□□□□ -0.25
VTI1B-204ENST00000554659 RPA4Q13156 261 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 GDF6Q6KF10 455 aaPredicted RBP13.47□□□□□ -0.25
VTI1B-204ENST00000554659 DNM1P34Q6PK57 102 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 ZNF227Q86WZ6 799 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 YIPF7Q8N8F6 280 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 MAFIPQ8WZ33 124 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 OVCA2Q8WZ82 227 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 THRSPQ92748 146 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 SMIM30A4D0T7 59 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 FAM72CH0Y354 149 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 SOCS5O75159 536 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 S1PR4O95977 384 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 CD40LGP29965 261 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 SLC10A2Q12908 348 aaPredicted RBP13.47□□□□□ -0.25
VTI1B-204ENST00000554659 PPIGQ13427 754 aaKnown RBP eCLIP13.47□□□□□ -0.25
VTI1B-204ENST00000554659 PIGGQ5H8A4 983 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 FAM72AQ5TYM5 149 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 FAM72DQ6L9T8 149 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 HSDL2Q6YN16 418 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 CTU1Q7Z7A3 348 aaKnown RBP13.47□□□□□ -0.25
VTI1B-204ENST00000554659 FAM72BQ86X60 149 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 CEP97Q8IW35 865 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 ITFG2Q969R8 447 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 MOAP1Q96BY2 351 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 NSUN5Q96P11 429 aaKnown RBP13.47□□□□□ -0.25
VTI1B-204ENST00000554659 CARS2Q9HA77 564 aaKnown RBP13.47□□□□□ -0.25
VTI1B-204ENST00000554659 DLGAP4Q9Y2H0 992 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 MYOCOSA0A1B0GUC4 107 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 ERP29P30040 261 aaKnown RBP13.47□□□□□ -0.25
VTI1B-204ENST00000554659 ARL3P36405 182 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 NRIP1P48552 1158 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 S100A12P80511 92 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 BTBD16Q32M84 506 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 LCN8Q6JVE9 175 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 ZNF783Q6ZMS7 281 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 NCCRP1Q6ZVX7 275 aaPredicted RBP13.47□□□□□ -0.25
VTI1B-204ENST00000554659 C14orf80Q86SX3 495 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 DCUN1D3Q8IWE4 304 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 CCDC28AQ8IWP9 274 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 SCML4Q8N228 414 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 ERVK-18Q9QC07 812 aa13.47□□□□□ -0.25
VTI1B-204ENST00000554659 HSD17B1P14061 328 aa13.46□□□□□ -0.25
VTI1B-204ENST00000554659 LCN1P31025 176 aa13.46□□□□□ -0.25
VTI1B-204ENST00000554659 ZNF81P51508 661 aa13.46□□□□□ -0.25
VTI1B-204ENST00000554659 FADDQ13158 208 aa13.46□□□□□ -0.25
VTI1B-204ENST00000554659 RHEBQ15382 184 aa13.46□□□□□ -0.25
VTI1B-204ENST00000554659 UAP1L1Q3KQV9 507 aa13.46□□□□□ -0.25
VTI1B-204ENST00000554659 ALG10Q5BKT4 473 aa13.46□□□□□ -0.25
VTI1B-204ENST00000554659 TXNDC8Q6A555 127 aa13.46□□□□□ -0.25
VTI1B-204ENST00000554659 HAGHLQ6PII5 290 aaPredicted RBP13.46□□□□□ -0.25
VTI1B-204ENST00000554659 AMIGO1Q86WK6 493 aa13.46□□□□□ -0.25
VTI1B-204ENST00000554659 PNLDC1Q8NA58 520 aaKnown RBP13.46□□□□□ -0.25
VTI1B-204ENST00000554659 POGLUT1Q8NBL1 392 aa13.46□□□□□ -0.25
VTI1B-204ENST00000554659 CD300LFQ8TDQ1 290 aa13.46□□□□□ -0.25
VTI1B-204ENST00000554659 OR51I1Q9H343 314 aa13.46□□□□□ -0.25
VTI1B-204ENST00000554659 ARVCFO00192 962 aa13.46□□□□□ -0.25
VTI1B-204ENST00000554659 FAAHO00519 579 aa13.46□□□□□ -0.25
VTI1B-204ENST00000554659 SCAMP1O15126 338 aa13.46□□□□□ -0.25
VTI1B-204ENST00000554659 NUAK1O60285 661 aa13.46□□□□□ -0.25
VTI1B-204ENST00000554659 SLC6A6P31641 620 aa13.46□□□□□ -0.25
VTI1B-204ENST00000554659 GDI2P50395 445 aaKnown RBP13.46□□□□□ -0.25
VTI1B-204ENST00000554659 SCAPQ12770 1279 aa13.46□□□□□ -0.25
VTI1B-204ENST00000554659 NFATC2Q13469 925 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms