RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 ABATP80404 500 aa9.98□□□□□ -0.81
SHMT2-215ENST00000554656 FAM53BQ14153 422 aa9.98□□□□□ -0.81
SHMT2-215ENST00000554656 INAQ16352 499 aa9.98□□□□□ -0.81
SHMT2-215ENST00000554656 FAM83EQ2M2I3 478 aa9.98□□□□□ -0.81
SHMT2-215ENST00000554656 RBM20Q5T481 1227 aaKnown RBP9.98□□□□□ -0.81
SHMT2-215ENST00000554656 ATG16L1Q676U5 607 aa9.98□□□□□ -0.81
SHMT2-215ENST00000554656 TTC19Q6DKK2 380 aaPredicted RBP9.98□□□□□ -0.81
SHMT2-215ENST00000554656 RAPH1Q70E73 1250 aa9.98□□□□□ -0.81
SHMT2-215ENST00000554656 ADCK2Q7Z695 626 aa9.98□□□□□ -0.81
SHMT2-215ENST00000554656 TBC1D1Q86TI0 1168 aaPredicted RBP9.98□□□□□ -0.81
SHMT2-215ENST00000554656 CPNE9Q8IYJ1 553 aa9.98□□□□□ -0.81
SHMT2-215ENST00000554656 GPATCH11Q8N954 259 aa9.98□□□□□ -0.81
SHMT2-215ENST00000554656 ARMC2Q8NEN0 867 aa9.98□□□□□ -0.81
SHMT2-215ENST00000554656 BCAS4Q8TDM0 211 aa9.98□□□□□ -0.81
SHMT2-215ENST00000554656 ITLN2Q8WWU7 325 aaPredicted RBP9.98□□□□□ -0.81
SHMT2-215ENST00000554656 ZNF75CPQ92670 426 aaPredicted RBP9.98□□□□□ -0.81
SHMT2-215ENST00000554656 RELTQ969Z4 430 aa9.98□□□□□ -0.81
SHMT2-215ENST00000554656 RERGQ96A58 199 aaPredicted RBP9.98□□□□□ -0.81
SHMT2-215ENST00000554656 MARVELD3Q96A59 401 aa9.98□□□□□ -0.81
SHMT2-215ENST00000554656 PRAP1Q96NZ9 151 aa9.98□□□□□ -0.81
SHMT2-215ENST00000554656 NPAS2Q99743 824 aa9.98□□□□□ -0.81
SHMT2-215ENST00000554656 PAIP2Q9BPZ3 127 aaKnown RBP9.98□□□□□ -0.81
SHMT2-215ENST00000554656 UNKQ9C0B0 810 aaKnown RBP9.98□□□□□ -0.81
SHMT2-215ENST00000554656 RNF32Q9H0A6 362 aa9.98□□□□□ -0.81
SHMT2-215ENST00000554656 HCN3Q9P1Z3 774 aa9.98□□□□□ -0.81
SHMT2-215ENST00000554656 ADAMTS6Q9UKP5 1117 aa9.98□□□□□ -0.81
SHMT2-215ENST00000554656 EMCNQ9ULC0 261 aa9.98□□□□□ -0.81
SHMT2-215ENST00000554656 ENTPD4Q9Y227 616 aa9.98□□□□□ -0.81
SHMT2-215ENST00000554656 CSMD2Q7Z408 3487 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 GTF3C1Q12789 2109 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 A0A1B0GUH1 482 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 ZNF839A8K0R7 811 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 NDUFAB1O14561 156 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 MAN1A2O60476 641 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 H2AFYO75367 372 aaKnown RBP9.97□□□□□ -0.81
SHMT2-215ENST00000554656 WFS1O76024 890 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 NSA2O95478 260 aaKnown RBP9.97□□□□□ -0.81
SHMT2-215ENST00000554656 RBP1P09455 135 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 C8orf89P0DMQ9 161 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 ENO3P13929 434 aaPredicted RBP9.97□□□□□ -0.81
SHMT2-215ENST00000554656 IL1RNP18510 177 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 BCL6P41182 706 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 SEC24CP53992 1094 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 TBPL1P62380 186 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 CSNK1G2P78368 415 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 ASPHQ12797 758 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 ZXDCQ2QGD7 858 aaPredicted RBP9.97□□□□□ -0.81
SHMT2-215ENST00000554656 TTLL9Q3SXZ7 439 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 THEMIS2Q5TEJ8 643 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 FCRLBQ6BAA4 426 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 UGT3A1Q6NUS8 523 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 GFRALQ6UXV0 394 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 UBE2R2Q712K3 238 aaPredicted RBP9.97□□□□□ -0.81
SHMT2-215ENST00000554656 CPLX4Q7Z7G2 160 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 PDSS2Q86YH6 399 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 NUDCD3Q8IVD9 361 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 CEP97Q8IW35 865 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 CENPLQ8N0S6 344 aaPredicted RBP9.97□□□□□ -0.81
SHMT2-215ENST00000554656 SLC34A3Q8N130 599 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 NKAPQ8N5F7 415 aaKnown RBP9.97□□□□□ -0.81
SHMT2-215ENST00000554656 UBXN10Q96LJ8 280 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 TUBB6Q9BUF5 446 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 CAB39LQ9H9S4 337 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 NMRAL1Q9HBL8 299 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 TAS2R13Q9NYV9 303 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 TMEM216Q9P0N5 145 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 ABI3Q9P2A4 366 aa9.97□□□□□ -0.81
SHMT2-215ENST00000554656 FEZF1A0PJY2 475 aa9.96□□□□□ -0.82
SHMT2-215ENST00000554656 OR5H15A6NDH6 313 aa9.96□□□□□ -0.82
SHMT2-215ENST00000554656 ENO4A6NNW6 628 aa9.96□□□□□ -0.82
SHMT2-215ENST00000554656 PRSS44E7EML9 344 aa9.96□□□□□ -0.82
SHMT2-215ENST00000554656 SGK494L7N484 410 aa9.96□□□□□ -0.82
SHMT2-215ENST00000554656 TXNDC9O14530 226 aa9.96□□□□□ -0.82
SHMT2-215ENST00000554656 PHGDHO43175 533 aaKnown RBP9.96□□□□□ -0.82
SHMT2-215ENST00000554656 HNRNPRO43390 633 aaKnown RBP9.96□□□□□ -0.82
SHMT2-215ENST00000554656 LCMT2O60294 686 aaKnown RBP9.96□□□□□ -0.82
SHMT2-215ENST00000554656 PRAMEF2O60811 474 aa9.96□□□□□ -0.82
SHMT2-215ENST00000554656 EDF1O60869 148 aaKnown RBP9.96□□□□□ -0.82
SHMT2-215ENST00000554656 RDH16O75452 317 aa9.96□□□□□ -0.82
SHMT2-215ENST00000554656 SNUPNO95149 360 aaKnown RBP9.96□□□□□ -0.82
SHMT2-215ENST00000554656 UNC5CO95185 931 aa9.96□□□□□ -0.82
SHMT2-215ENST00000554656 VIMP08670 466 aaKnown RBP9.96□□□□□ -0.82
SHMT2-215ENST00000554656 LTA4HP09960 611 aaKnown RBP9.96□□□□□ -0.82
SHMT2-215ENST00000554656 GRK2P25098 689 aa9.96□□□□□ -0.82
SHMT2-215ENST00000554656 XCR1P46094 333 aa9.96□□□□□ -0.82
SHMT2-215ENST00000554656 PGGT1BP53609 377 aa9.96□□□□□ -0.82
SHMT2-215ENST00000554656 ZNF33BQ06732 778 aa9.96□□□□□ -0.82
SHMT2-215ENST00000554656 ACAP2Q15057 778 aa9.96□□□□□ -0.82
SHMT2-215ENST00000554656 NDUFA9Q16795 377 aa9.96□□□□□ -0.82
SHMT2-215ENST00000554656 SP5Q6BEB4 398 aaPredicted RBP9.96□□□□□ -0.82
SHMT2-215ENST00000554656 PLAG1Q6DJT9 500 aa9.96□□□□□ -0.82
SHMT2-215ENST00000554656 TMEM214Q6NUQ4 689 aaKnown RBP9.96□□□□□ -0.82
SHMT2-215ENST00000554656 H3F3CQ6NXT2 135 aa9.96□□□□□ -0.82
SHMT2-215ENST00000554656 KLC3Q6P597 504 aa9.96□□□□□ -0.82
SHMT2-215ENST00000554656 CPEB2Q7Z5Q1 589 aaKnown RBP9.96□□□□□ -0.82
SHMT2-215ENST00000554656 ANKRD37Q7Z713 158 aa9.96□□□□□ -0.82
SHMT2-215ENST00000554656 LRRC34Q8IZ02 419 aa9.96□□□□□ -0.82
SHMT2-215ENST00000554656 BEST3Q8N1M1 668 aa9.96□□□□□ -0.82
SHMT2-215ENST00000554656 PLD6Q8N2A8 252 aaKnown RBP9.96□□□□□ -0.82
SHMT2-215ENST00000554656 CCDC63Q8NA47 563 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms