RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 KAT2AQ92830 837 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 DNAJA3Q96EY1 480 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 PPP1R16AQ96I34 528 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 BBS4Q96RK4 519 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 ZCCHC2Q9C0B9 1178 aaKnown RBP5.35□□□□□ -1.55
LIMA1-215ENST00000552823 MTIF3Q9H2K0 278 aaKnown RBP5.35□□□□□ -1.55
LIMA1-215ENST00000552823 WDR26Q9H7D7 661 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 MARCH7Q9H992 704 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 PREBQ9HCU5 417 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 STARD5Q9NSY2 213 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 IRAK4Q9NWZ3 460 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 C3orf18Q9UK00 162 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 PCDHB11Q9Y5F2 797 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 IGLV3-16A0A075B6K0 115 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 GSAPA4D1B5 854 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 NPC1O15118 1278 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 ERI3O43414 337 aaKnown RBP5.35□□□□□ -1.55
LIMA1-215ENST00000552823 SLC28A2O43868 658 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 PRKNO60260 465 aaPredicted RBP5.35□□□□□ -1.55
LIMA1-215ENST00000552823 SNRNP200O75643 2136 aaKnown RBP5.35□□□□□ -1.55
LIMA1-215ENST00000552823 MT-ND2P03891 347 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 ASLP04424 464 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 ASGR2P07307 311 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 OR12D1P0DN82 309 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 CDK4P11802 303 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 PVRP15151 417 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 CD9P21926 228 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 OPRD1P41143 372 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 BUD31P41223 144 aaPredicted RBP5.35□□□□□ -1.55
LIMA1-215ENST00000552823 CDK9P50750 372 aaKnown RBP5.35□□□□□ -1.55
LIMA1-215ENST00000552823 CDK3Q00526 305 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 CDK6Q00534 326 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 MVKQ03426 396 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 LASP1Q14847 261 aaKnown RBP5.35□□□□□ -1.55
LIMA1-215ENST00000552823 CST6Q15828 149 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 EXOC3L2Q2M3D2 409 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 COQ5Q5HYK3 327 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 PAGE2BQ5JRK9 111 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 LIPJQ5W064 366 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 LAIR1Q6GTX8 287 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 PRR23BQ6ZRT6 265 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 GPR149Q86SP6 731 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 LRRTM4Q86VH4 590 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 C11orf65Q8NCR3 313 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 CHDHQ8NE62 594 aaPredicted RBP5.35□□□□□ -1.55
LIMA1-215ENST00000552823 TNIP2Q8NFZ5 429 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 COL21A1Q96P44 957 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 MBOAT4Q96T53 435 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 RBM4BQ9BQ04 359 aaKnown RBP5.35□□□□□ -1.55
LIMA1-215ENST00000552823 RBM4Q9BWF3 364 aaKnown RBP5.35□□□□□ -1.55
LIMA1-215ENST00000552823 OSBPL10Q9BXB5 764 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 EHD1Q9H4M9 534 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 RETREG1Q9H6L5 497 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 DMRT3Q9NQL9 472 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 ITM2CQ9NQX7 267 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 RAD18Q9NS91 495 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 ADPRHL2Q9NX46 363 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 TRBC2A0A5B9 178 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 OR2W5A6NFC9 320 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 PI15O43692 258 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 BCL10O95999 233 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 APODP05090 189 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 DBTP11182 482 aaKnown RBP5.35□□□□□ -1.55
LIMA1-215ENST00000552823 TYRP1P17643 537 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 ACTR1BP42025 376 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 CCR3P51677 355 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 ACTR1AP61163 376 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 RPS3AP61247 264 aaKnown RBP5.35□□□□□ -1.55
LIMA1-215ENST00000552823 RPP38P78345 283 aaKnown RBP5.35□□□□□ -1.55
LIMA1-215ENST00000552823 ADARB1P78563 741 aaKnown RBP5.35□□□□□ -1.55
LIMA1-215ENST00000552823 ALDH6A1Q02252 535 aaKnown RBP5.35□□□□□ -1.55
LIMA1-215ENST00000552823 FGL2Q14314 439 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 LRRC32Q14392 662 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 IRF4Q15306 451 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 DUSP7Q16829 419 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 GCNT6Q5T4J0 391 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 ZDHHC20Q5W0Z9 365 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 ATG9BQ674R7 924 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 PNCKQ6P2M8 343 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 LGI4Q8N135 537 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 MFSD2AQ8NA29 543 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 B4GALNT2Q8NHY0 566 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 HM13Q8TCT9 377 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 HMGB4Q8WW32 186 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 RORBQ92753 470 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 NODALQ96S42 347 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 NLNQ9BYT8 704 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 REEP4Q9H6H4 257 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 RNF167Q9H6Y7 350 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 CXorf36Q9H7Y0 433 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 IMPAD1Q9NX62 359 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 SPHK1Q9NYA1 384 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 NDUFA13Q9P0J0 144 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 KLHL3Q9UH77 587 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 HCN2Q9UL51 889 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 DUSP12Q9UNI6 340 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 SAMD4AQ9UPU9 718 aaKnown RBP5.35□□□□□ -1.55
LIMA1-215ENST00000552823 EXO1Q9UQ84 846 aaKnown RBP5.35□□□□□ -1.55
LIMA1-215ENST00000552823 SDK2Q58EX2 2172 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 DYTNA2CJ06 578 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms