RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 SYTL1Q8IYJ3 562 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 VPS37AQ8NEZ2 397 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 OR56A3Q8NH54 315 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 ZNF480Q8WV37 535 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 POP5Q969H6 163 aaKnown RBP7.19□□□□□ -1.26
LIMA1-213ENST00000552720 TCEAL4Q96EI5 215 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 OR5M11Q96RB7 305 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 RSPO3Q9BXY4 272 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-213ENST00000552720 SPASTQ9UBP0 616 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 PCDHGA4Q9Y5G9 962 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 HCFC2Q9Y5Z7 792 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 SLC5A10A0PJK1 596 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 AGAP5A6NIR3 686 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 K7ESM1 405 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 ADAMDEC1O15204 470 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 SSX4O60224 188 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 RECKO95980 971 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 ALDH1A1P00352 501 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 IGFBP1P08833 259 aaPredicted RBP7.18□□□□□ -1.26
LIMA1-213ENST00000552720 ALOX5P09917 674 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 TIMP2P16035 220 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 VIPR1P32241 457 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 ASMTP46597 345 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 C21orf58P58505 322 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 C2orf80Q0P641 193 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 TMEM115Q12893 351 aaPredicted RBP7.18□□□□□ -1.26
LIMA1-213ENST00000552720 SLBPQ14493 270 aaKnown RBP eCLIP7.18□□□□□ -1.26
LIMA1-213ENST00000552720 MICAQ29983 383 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 LEXMQ3ZCV2 418 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 IFI44LQ53G44 452 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 ARMCX4Q5H9R4 360 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 RPS26P11Q5JNZ5 115 aaPredicted RBP7.18□□□□□ -1.26
LIMA1-213ENST00000552720 TMEM220Q6QAJ8 160 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 NEK10Q6ZWH5 1172 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 WDR53Q7Z5U6 358 aaPredicted RBP7.18□□□□□ -1.26
LIMA1-213ENST00000552720 CAMKMTQ7Z624 323 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 METTL3Q86U44 580 aaKnown RBP7.18□□□□□ -1.26
LIMA1-213ENST00000552720 STX19Q8N4C7 294 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 KIAA1958Q8N8K9 716 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 POC5Q8NA72 575 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 B3GNT7Q8NFL0 401 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.18□□□□□ -1.26
LIMA1-213ENST00000552720 BTN2A2Q8WVV5 523 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 WRAP53Q9BUR4 548 aaKnown RBP7.18□□□□□ -1.26
LIMA1-213ENST00000552720 REEP4Q9H6H4 257 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 BRF2Q9HAW0 419 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 C1GALT1Q9NS00 363 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 ACER3Q9NUN7 267 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 FKBP14Q9NWM8 211 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 MS4A12Q9NXJ0 267 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 ZNF282Q9UDV7 671 aaPredicted RBP7.18□□□□□ -1.26
LIMA1-213ENST00000552720 POU2F3Q9UKI9 436 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 CFAP20Q9Y6A4 193 aaKnown RBP7.18□□□□□ -1.26
LIMA1-213ENST00000552720 RNASET2O00584 256 aaKnown RBP7.18□□□□□ -1.26
LIMA1-213ENST00000552720 KPNA5O15131 536 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 LRG1P02750 347 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 CATP04040 527 aaKnown RBP7.18□□□□□ -1.26
LIMA1-213ENST00000552720 C8AP07357 584 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 FURINP09958 794 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 TYRP14679 529 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 NPPBP16860 134 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 SOAT1P35610 550 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 FEN1P39748 380 aaKnown RBP7.18□□□□□ -1.26
LIMA1-213ENST00000552720 PRIM2P49643 509 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 NKX2-5P52952 324 aaPredicted RBP7.18□□□□□ -1.26
LIMA1-213ENST00000552720 TAS2R50P59544 299 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 POLR2LP62875 67 aaKnown RBP7.18□□□□□ -1.26
LIMA1-213ENST00000552720 ZNF763Q0D2J5 394 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 KCNC3Q14003 757 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 PTGES3Q15185 160 aaKnown RBP7.18□□□□□ -1.26
LIMA1-213ENST00000552720 MED22Q15528 200 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 TEAD4Q15561 434 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 DUSP7Q16829 419 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 SPIN4Q56A73 249 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 TPRG1LQ5T0D9 272 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 GCNT6Q5T4J0 391 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 ANXA8L1Q5VT79 327 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 ZDHHC20Q5W0Z9 365 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 MED27Q6P2C8 311 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 KLHL17Q6TDP4 642 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 SPATC1Q76KD6 591 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 ZNF605Q86T29 641 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 HEATR4Q86WZ0 1026 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 LSRQ86X29 649 aaPredicted RBP7.18□□□□□ -1.26
LIMA1-213ENST00000552720 ARMC8Q8IUR7 673 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 CFAP206Q8IYR0 622 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 CYP4Z2PQ8N1L4 340 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 PARP16Q8N5Y8 322 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 MYDGFQ969H8 173 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 ITPKCQ96DU7 683 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 FAM129BQ96TA1 746 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 TMEM106CQ9BVX2 250 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 EMILIN2Q9BXX0 1053 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 ABCG4Q9H172 646 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 MMP27Q9H306 513 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 PLCXD1Q9NUJ7 323 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 SPG21Q9NZD8 308 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 RAB23Q9ULC3 237 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 OGDHLQ9ULD0 1010 aa7.18□□□□□ -1.26
LIMA1-213ENST00000552720 DUSP12Q9UNI6 340 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms