RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 BPIFA1Q9NP55 256 aa3.83□□□□□ -1.8
SNHG1-220ENST00000544550 MMP25Q9NPA2 562 aa3.83□□□□□ -1.8
SNHG1-220ENST00000544550 ETNK2Q9NVF9 386 aa3.83□□□□□ -1.8
SNHG1-220ENST00000544550 ANKRD10Q9NXR5 420 aa3.83□□□□□ -1.8
SNHG1-220ENST00000544550 CAMSAP3Q9P1Y5 1249 aaPredicted RBP3.83□□□□□ -1.8
SNHG1-220ENST00000544550 TRPC4Q9UBN4 977 aa3.83□□□□□ -1.8
SNHG1-220ENST00000544550 MTRF1LQ9UGC7 380 aaKnown RBP3.83□□□□□ -1.8
SNHG1-220ENST00000544550 ASF1AQ9Y294 204 aa3.83□□□□□ -1.8
SNHG1-220ENST00000544550 SCINQ9Y6U3 715 aa3.83□□□□□ -1.8
SNHG1-220ENST00000544550 PMF1-BGLAPU3KQ54 211 aa3.83□□□□□ -1.8
SNHG1-220ENST00000544550 FER1L5A0AVI2 2057 aa3.83□□□□□ -1.8
SNHG1-220ENST00000544550 PKDREJQ9NTG1 2253 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 PRRC2AP48634 2157 aaKnown RBP3.82□□□□□ -1.8
SNHG1-220ENST00000544550 A0A0G2JNJ9 132 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 TMEM191CA6NGB0 347 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 CLCA1A8K7I4 914 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 HSPB2A8KAH6 182 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 TARM1B6A8C7 271 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 QSOX1O00391 747 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 LIN7AO14910 233 aaPredicted RBP3.82□□□□□ -1.8
SNHG1-220ENST00000544550 PHF1O43189 567 aaPredicted RBP3.82□□□□□ -1.8
SNHG1-220ENST00000544550 ZNHIT1O43257 154 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 TLX2O43763 284 aaPredicted RBP3.82□□□□□ -1.8
SNHG1-220ENST00000544550 MFSD11O43934 449 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 HS6ST1O60243 411 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 WDR1O75083 606 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 DNAJB6O75190 326 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 IL33O95760 270 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 AP2A1O95782 977 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 RPN2P04844 631 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 ATP1B2P14415 290 aaPredicted RBP3.82□□□□□ -1.8
SNHG1-220ENST00000544550 FPR1P21462 350 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 MCM3P25205 808 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 AGTR2P50052 363 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 ASCL1P50553 236 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 ARSEP51690 589 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 IFI35P80217 286 aaPredicted RBP3.82□□□□□ -1.8
SNHG1-220ENST00000544550 SORDQ00796 357 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 PLOD1Q02809 727 aaPredicted RBP3.82□□□□□ -1.8
SNHG1-220ENST00000544550 HSPB2Q16082 182 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 ADRM1Q16186 407 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 CHRFAM7AQ494W8 412 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 GXYLT1Q4G148 440 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 WASHC2DQ5SRD0 308 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 RIPPLY2Q5TAB7 128 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 ERICH6BQ5W0A0 696 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 RGS9BPQ6ZS82 235 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 ARHGEF18Q6ZSZ5 1173 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 SYDE1Q6ZW31 735 aaPredicted RBP3.82□□□□□ -1.8
SNHG1-220ENST00000544550 GLT6D1Q7Z4J2 308 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 CPEB2Q7Z5Q1 589 aaKnown RBP3.82□□□□□ -1.8
SNHG1-220ENST00000544550 DAAM2Q86T65 1068 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 CRLF3Q8IUI8 442 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 RPRMLQ8N4K4 120 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 CCNYQ8ND76 341 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 OR5K2Q8NHB8 316 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 SMPDL3BQ92485 455 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 RNASE6Q93091 150 aaKnown RBP3.82□□□□□ -1.8
SNHG1-220ENST00000544550 ULK4Q96C45 1275 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 IMP4Q96G21 291 aaKnown RBP3.82□□□□□ -1.8
SNHG1-220ENST00000544550 CABS1Q96KC9 395 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 MESP1Q9BRJ9 268 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 ATG10Q9H0Y0 220 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 SLC25A51Q9H1U9 297 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 ASB8Q9H765 288 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 TRIM45Q9H8W5 580 aaPredicted RBP3.82□□□□□ -1.8
SNHG1-220ENST00000544550 MRPL47Q9HD33 250 aaKnown RBP3.82□□□□□ -1.8
SNHG1-220ENST00000544550 SPHK1Q9NYA1 384 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 Q9UFV3 132 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 SCOCQ9UIL1 159 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 CRLS1Q9UJA2 301 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 TDRKHQ9Y2W6 561 aaKnown RBP3.82□□□□□ -1.8
SNHG1-220ENST00000544550 DCHS2Q6V1P9 2916 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 PIKFYVEQ9Y2I7 2098 aa3.82□□□□□ -1.8
SNHG1-220ENST00000544550 TRIM64A6NGJ6 449 aa3.81□□□□□ -1.8
SNHG1-220ENST00000544550 TRIM64BA6NI03 449 aa3.81□□□□□ -1.8
SNHG1-220ENST00000544550 NPIPA2E9PIF3 369 aa3.81□□□□□ -1.8
SNHG1-220ENST00000544550 F8W8V4 182 aa3.81□□□□□ -1.8
SNHG1-220ENST00000544550 NPIPA3F8WFD2 350 aa3.81□□□□□ -1.8
SNHG1-220ENST00000544550 FCHO1O14526 889 aa3.81□□□□□ -1.8
SNHG1-220ENST00000544550 TXNDC9O14530 226 aa3.81□□□□□ -1.8
SNHG1-220ENST00000544550 NDC80O14777 642 aa3.81□□□□□ -1.8
SNHG1-220ENST00000544550 STX7O15400 261 aaKnown RBP3.81□□□□□ -1.8
SNHG1-220ENST00000544550 SPRY1O43609 319 aaPredicted RBP3.81□□□□□ -1.8
SNHG1-220ENST00000544550 NRP2O60462 931 aa3.81□□□□□ -1.8
SNHG1-220ENST00000544550 PHF2O75151 1096 aa3.81□□□□□ -1.8
SNHG1-220ENST00000544550 VPS26AO75436 327 aa3.81□□□□□ -1.8
SNHG1-220ENST00000544550 SRP72O76094 671 aaKnown RBP3.81□□□□□ -1.8
SNHG1-220ENST00000544550 CNOT4O95628 575 aaKnown RBP3.81□□□□□ -1.8
SNHG1-220ENST00000544550 EPOP01588 193 aa3.81□□□□□ -1.8
SNHG1-220ENST00000544550 TPM2P07951 284 aa3.81□□□□□ -1.8
SNHG1-220ENST00000544550 GABRA1P14867 456 aa3.81□□□□□ -1.8
SNHG1-220ENST00000544550 ITGALP20701 1170 aa3.81□□□□□ -1.8
SNHG1-220ENST00000544550 PTPN3P26045 913 aa3.81□□□□□ -1.8
SNHG1-220ENST00000544550 IL1R2P27930 398 aa3.81□□□□□ -1.8
SNHG1-220ENST00000544550 PKLRP30613 574 aa3.81□□□□□ -1.8
SNHG1-220ENST00000544550 SLC26A3P40879 764 aa3.81□□□□□ -1.8
SNHG1-220ENST00000544550 VSX2P58304 361 aaPredicted RBP3.81□□□□□ -1.8
SNHG1-220ENST00000544550 POLR2FP61218 127 aaKnown RBP3.81□□□□□ -1.8
SNHG1-220ENST00000544550 PPIDQ08752 370 aaKnown RBP3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms