RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 FAM76AQ8TAV0 307 aa16.62■□□□□ 0.25
CLSTN3-210ENST00000540931 MDM1Q8TC05 714 aa16.62■□□□□ 0.25
CLSTN3-210ENST00000540931 PMEPA1Q969W9 287 aa16.62■□□□□ 0.25
CLSTN3-210ENST00000540931 IP6K3Q96PC2 410 aa16.62■□□□□ 0.25
CLSTN3-210ENST00000540931 TGIF2Q9GZN2 237 aa16.62■□□□□ 0.25
CLSTN3-210ENST00000540931 GPN2Q9H9Y4 310 aaPredicted RBP16.62■□□□□ 0.25
CLSTN3-210ENST00000540931 HAO1Q9UJM8 370 aa16.62■□□□□ 0.25
CLSTN3-210ENST00000540931 SETXQ7Z333 2677 aaKnown RBP16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 ARHGAP10A1A4S6 786 aa16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 NPIPB8E9PQR5 432 aa16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 PSMD12O00232 456 aaPredicted RBP16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 PPP6CO00743 305 aa16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 UBFD1O14562 309 aaKnown RBP16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 KLHL18O94889 574 aa16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 SCELO95171 688 aa16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 TGFB1P01137 390 aa16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 ZNF888P0CJ79 500 aaPredicted RBP16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 BGNP21810 368 aa16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 EIF2S3P41091 472 aaKnown RBP16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 RPS13P62277 151 aaKnown RBP16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 NCF4Q15080 339 aa16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 SH2D4BQ5SQS7 431 aa16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 KANK2Q63ZY3 851 aa16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 OR4C11Q6IEV9 310 aa16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 ZCCHC23Q6ZST2 131 aa16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 VN1R5Q7Z5H4 357 aa16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 NUDT13Q86X67 352 aa16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 LRRC34Q8IZ02 419 aa16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 ZCCHC7Q8N3Z6 543 aaKnown RBP16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 SLC38A9Q8NBW4 561 aa16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 ZCCHC10Q8TBK6 192 aa16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 BBC3Q96PG8 261 aaPredicted RBP16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 LYRM4Q9HD34 91 aa16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 RIC8BQ9NVN3 520 aa16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 VTI1BQ9UEU0 232 aa16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 PHF11Q9UIL8 331 aa16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 FARSAQ9Y285 508 aaKnown RBP16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 WBP11Q9Y2W2 641 aaKnown RBP16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 NAALAD2Q9Y3Q0 740 aa16.61■□□□□ 0.25
CLSTN3-210ENST00000540931 HELZ2Q9BYK8 2649 aaKnown RBP16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 IGLV3-12A0A075B6K2 115 aa16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 A0A0A6YYC8 382 aaPredicted RBP16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 I3L1I5 382 aaPredicted RBP16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 FOXS1O43638 330 aa16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 VPS4BO75351 444 aa16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 RSL1D1O76021 490 aaKnown RBP16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 MYO1DO94832 1006 aa16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 PDYNP01213 254 aa16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 RNH1P13489 461 aaKnown RBP16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 TLX1P31314 330 aaPredicted RBP16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 SSR2P43308 183 aa16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 TRA2BP62995 288 aaKnown RBP16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 BTN3A2P78410 334 aa16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 BST1Q10588 318 aa16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 BIKQ13323 160 aa16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 DNASE1L3Q13609 305 aa16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 SLC9A5Q14940 896 aa16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 DEFB134Q4QY38 66 aa16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 TIPARPQ7Z3E1 657 aaKnown RBP16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 ZNF75CPQ92670 426 aaPredicted RBP16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 ZBTB9Q96C00 473 aa16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 MOCOSQ96EN8 888 aa16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 MAGEB18Q96M61 343 aa16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 CCNL2Q96S94 520 aaPredicted RBP16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 CHST8Q9H2A9 424 aa16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 MLXIPLQ9NP71 852 aa16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 PRDM9Q9NQV7 894 aa16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 LYARQ9NX58 379 aaKnown RBP16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 SIRT5Q9NXA8 310 aa16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 SLC12A4Q9UP95 1085 aa16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 RAXQ9Y2V3 346 aa16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 TMED5Q9Y3A6 229 aa16.6■□□□□ 0.25
CLSTN3-210ENST00000540931 TRPC5OSA6NMA1 111 aa16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 CLDN4O14493 209 aa16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 SNNO75324 88 aaPredicted RBP16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 IL1RNP18510 177 aa16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 HIST1H1TP22492 207 aaPredicted RBP16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 PRPH2P23942 346 aa16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 PTPN4P29074 926 aa16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 HNRNPH1P31943 449 aaKnown RBP16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 DLSTP36957 453 aa16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 NEK2P51955 445 aa16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 PLA2G16P53816 162 aa16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 RAB8AP61006 207 aa16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 ACSM2AQ08AH3 577 aa16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 MAD2L1Q13257 205 aaPredicted RBP16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 SMU1Q2TAY7 513 aa16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 PRAMEF17Q5VTA0 474 aa16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 C1orf189Q5VU69 101 aa16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 ACSM2BQ68CK6 577 aa16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 MRPL14Q6P1L8 145 aaKnown RBP16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 CYP20A1Q6UW02 462 aa16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 RGS9BPQ6ZS82 235 aa16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 CRLF3Q8IUI8 442 aa16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 METTL4Q8N3J2 472 aa16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 OR9A4Q8NGU2 314 aa16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 MIEF2Q96C03 454 aa16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 MTFMTQ96DP5 389 aaKnown RBP16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 SLC45A3Q96JT2 553 aa16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 C7orf26Q96N11 449 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms