RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 PCDHGA5Q9Y5G8 931 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.47□□□□□ -1.05
YBX3-208ENST00000540447 NAP1L6A6NFF2 107 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 SOBPA7XYQ1 873 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 KHNYNO15037 678 aaKnown RBP8.47□□□□□ -1.05
YBX3-208ENST00000540447 ARPC1BO15143 372 aaKnown RBP8.47□□□□□ -1.05
YBX3-208ENST00000540447 NR2C1P13056 603 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 KCNA6P17658 529 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 PTPN2P17706 415 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 AGXTP21549 392 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 TBX4P57082 545 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 MS4A2Q01362 244 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 ABHD18Q0P651 414 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 AANATQ16613 207 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 C2orf76Q3KRA6 126 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 LRIT3Q3SXY7 679 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 SLX4IPQ5VYV7 408 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 C1orf186Q6ZWK4 172 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 ZNF584Q8IVC4 421 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 LINC00471Q8N535 108 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 REPS2Q8NFH8 660 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 OR10R2Q8NGX6 335 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 ADAMTS15Q8TE58 950 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 SCARB1Q8WTV0 552 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 CA5BP1Q8WTZ4 195 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 HPSE2Q8WWQ2 592 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 NT5C3BQ969T7 300 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 PLA2G12BQ9BX93 195 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 SLC39A8Q9C0K1 460 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 SLC28A3Q9HAS3 691 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 CARNS1A5YM72 827 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 A8MT66 165 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 TNFRSF10BO14763 440 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 STK16O75716 305 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 PIRTP0C851 137 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 ATP5C1P36542 298 aaKnown RBP8.47□□□□□ -1.05
YBX3-208ENST00000540447 LSSP48449 732 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 PTH2RP49190 550 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 FABP6P51161 128 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 AIF1P55008 147 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 DLX5P56178 289 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 EMX1Q04741 257 aaPredicted RBP8.47□□□□□ -1.05
YBX3-208ENST00000540447 TRAM2Q15035 370 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 HLA-DQA1Q5Y7H0 255 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 LCN8Q6JVE9 175 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 ADAM5Q6NVV9 412 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 SLC22A25Q6T423 547 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 PRSS55Q6UWB4 352 aaPredicted RBP8.47□□□□□ -1.05
YBX3-208ENST00000540447 ZNF578Q96N58 590 aaPredicted RBP8.47□□□□□ -1.05
YBX3-208ENST00000540447 GPR21Q99679 349 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 CCDC3Q9BQI4 270 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 OR51I1Q9H343 314 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 EMC7Q9NPA0 242 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 CTPS2Q9NRF8 586 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 KIAA1522Q9P206 1035 aaPredicted RBP8.47□□□□□ -1.05
YBX3-208ENST00000540447 BPNT1O95861 308 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 CD48P09326 243 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 PKMP14618 531 aaKnown RBP8.47□□□□□ -1.05
YBX3-208ENST00000540447 GKP32189 559 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 AVPR1BP47901 424 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 KIAA1024LP59773 190 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 CYCSP99999 105 aaKnown RBP8.47□□□□□ -1.05
YBX3-208ENST00000540447 CDNFQ49AH0 187 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 XKR4Q5GH76 650 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 FAM69AQ5T7M9 428 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 ARHGAP11AQ6P4F7 1023 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 COX15Q7KZN9 410 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 RNF130Q86XS8 419 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 ADGRG2Q8IZP9 1017 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 OR4C5Q8NGB2 326 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 FKBP10Q96AY3 582 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 DUSP26Q9BV47 211 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 GAREM1Q9H706 876 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 MRPS30Q9NP92 439 aaKnown RBP8.47□□□□□ -1.05
YBX3-208ENST00000540447 EQTNQ9NQ60 294 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 A0A0D9SG52 128 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 WASH3PC4AMC7 463 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 LRCH4O75427 683 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 ALPIP09923 528 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 ZNF10P21506 573 aaPredicted RBP8.47□□□□□ -1.05
YBX3-208ENST00000540447 LPOP22079 712 aaPredicted RBP8.47□□□□□ -1.05
YBX3-208ENST00000540447 MC4RP32245 332 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 PPT1P50897 306 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 UBE2KP61086 200 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 VAMP3Q15836 100 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 NDUFA9Q16795 377 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 TEX44Q53QW1 395 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 C9orf64Q5T6V5 341 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 NUDT18Q6ZVK8 323 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 ZNF546Q86UE3 836 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 FAM124AQ86V42 546 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 MARC2Q969Z3 335 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 RAB39BQ96DA2 213 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 ARHGAP39Q9C0H5 1083 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 TDRD3Q9H7E2 651 aaKnown RBP8.47□□□□□ -1.05
YBX3-208ENST00000540447 INIPQ9NRY2 104 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 TAS2R8Q9NYW2 309 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 ZNF780BQ9Y6R6 833 aa8.47□□□□□ -1.05
YBX3-208ENST00000540447 TRBC2A0A5B9 178 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 HBP1O60381 514 aa8.46□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 117.5 ms