RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 SPTA1P02549 2419 aa18.73■□□□□ 0.59
CPSF1-209ENST00000532725 LOC102723996A0A087X1L8 192 aa18.73■□□□□ 0.59
CPSF1-209ENST00000532725 A0A0G2JN53 185 aa18.73■□□□□ 0.59
CPSF1-209ENST00000532725 EIF4E1BA6NMX2 242 aaKnown RBP18.73■□□□□ 0.59
CPSF1-209ENST00000532725 COPEO14579 308 aa18.73■□□□□ 0.59
CPSF1-209ENST00000532725 PCDH17O14917 1159 aa18.73■□□□□ 0.59
CPSF1-209ENST00000532725 PLIN3O60664 434 aa18.73■□□□□ 0.59
CPSF1-209ENST00000532725 FHP07954 510 aa18.73■□□□□ 0.59
CPSF1-209ENST00000532725 CLCQ05315 142 aa18.73■□□□□ 0.59
CPSF1-209ENST00000532725 ZRSR2Q15696 482 aaKnown RBP18.73■□□□□ 0.59
CPSF1-209ENST00000532725 CCDC153Q494R4 210 aa18.73■□□□□ 0.59
CPSF1-209ENST00000532725 TMEM35AQ53FP2 167 aa18.73■□□□□ 0.59
CPSF1-209ENST00000532725 DEPDC1Q5TB30 811 aa18.73■□□□□ 0.59
CPSF1-209ENST00000532725 FAAH2Q6GMR7 532 aa18.73■□□□□ 0.59
CPSF1-209ENST00000532725 TRIM40Q6P9F5 258 aa18.73■□□□□ 0.59
CPSF1-209ENST00000532725 CHSY3Q70JA7 882 aa18.73■□□□□ 0.59
CPSF1-209ENST00000532725 MILR1Q7Z6M3 343 aa18.73■□□□□ 0.59
CPSF1-209ENST00000532725 CA13Q8N1Q1 262 aa18.73■□□□□ 0.59
CPSF1-209ENST00000532725 ZNF843Q8N446 348 aa18.73■□□□□ 0.59
CPSF1-209ENST00000532725 SRFBP1Q8NEF9 429 aaKnown RBP18.73■□□□□ 0.59
CPSF1-209ENST00000532725 C9orf43Q8TAL5 461 aaPredicted RBP18.73■□□□□ 0.59
CPSF1-209ENST00000532725 REPS1Q96D71 796 aa18.73■□□□□ 0.59
CPSF1-209ENST00000532725 L3HYPDHQ96EM0 354 aa18.73■□□□□ 0.59
CPSF1-209ENST00000532725 VPS50Q96JG6 964 aa18.73■□□□□ 0.59
CPSF1-209ENST00000532725 TMEM237Q96Q45 408 aa18.73■□□□□ 0.59
CPSF1-209ENST00000532725 MTERF1Q99551 399 aaKnown RBP18.73■□□□□ 0.59
CPSF1-209ENST00000532725 NPLQ9BXD5 320 aaPredicted RBP18.73■□□□□ 0.59
CPSF1-209ENST00000532725 OR51B5Q9H339 312 aa18.73■□□□□ 0.59
CPSF1-209ENST00000532725 C12orf65Q9H3J6 166 aaKnown RBP18.73■□□□□ 0.59
CPSF1-209ENST00000532725 ZNF71Q9NQZ8 489 aaPredicted RBP18.73■□□□□ 0.59
CPSF1-209ENST00000532725 ZNF225Q9UK10 706 aa18.73■□□□□ 0.59
CPSF1-209ENST00000532725 PCDHGA9Q9Y5G4 932 aaKnown RBP18.73■□□□□ 0.59
CPSF1-209ENST00000532725 A6NL46 340 aa18.72■□□□□ 0.59
CPSF1-209ENST00000532725 FAM227AF5H4B4 570 aa18.72■□□□□ 0.59
CPSF1-209ENST00000532725 SUPT7LO94864 414 aa18.72■□□□□ 0.59
CPSF1-209ENST00000532725 ACPPP15309 386 aa18.72■□□□□ 0.59
CPSF1-209ENST00000532725 TSPAN8P19075 237 aa18.72■□□□□ 0.59
CPSF1-209ENST00000532725 NEK2P51955 445 aa18.72■□□□□ 0.59
CPSF1-209ENST00000532725 RHAGQ02094 409 aa18.72■□□□□ 0.59
CPSF1-209ENST00000532725 AIMP2Q13155 320 aaKnown RBP18.72■□□□□ 0.59
CPSF1-209ENST00000532725 TUBB8Q3ZCM7 444 aa18.72■□□□□ 0.59
CPSF1-209ENST00000532725 MINDY4Q4G0A6 757 aa18.72■□□□□ 0.59
CPSF1-209ENST00000532725 GGTA1PQ4G0N0 100 aa18.72■□□□□ 0.59
CPSF1-209ENST00000532725 KHDRBS2Q5VWX1 349 aaKnown RBP18.72■□□□□ 0.59
CPSF1-209ENST00000532725 ZYG11AQ6WRX3 759 aa18.72■□□□□ 0.59
CPSF1-209ENST00000532725 NDUFAF7Q7L592 441 aa18.72■□□□□ 0.59
CPSF1-209ENST00000532725 BANPQ8N9N5 519 aa18.72■□□□□ 0.59
CPSF1-209ENST00000532725 CLEC1AQ8NC01 280 aa18.72■□□□□ 0.59
CPSF1-209ENST00000532725 FDCSPQ8NFU4 85 aa18.72■□□□□ 0.59
CPSF1-209ENST00000532725 OR4F6Q8NGB9 312 aa18.72■□□□□ 0.59
CPSF1-209ENST00000532725 TRPC4APQ8TEL6 797 aa18.72■□□□□ 0.59
CPSF1-209ENST00000532725 SERINC2Q96SA4 455 aa18.72■□□□□ 0.59
CPSF1-209ENST00000532725 TBCDQ9BTW9 1192 aa18.72■□□□□ 0.59
CPSF1-209ENST00000532725 SLC25A23Q9BV35 468 aa18.72■□□□□ 0.59
CPSF1-209ENST00000532725 DMRT3Q9NQL9 472 aa18.72■□□□□ 0.59
CPSF1-209ENST00000532725 A0A088AWK7 358 aa18.71■□□□□ 0.59
CPSF1-209ENST00000532725 MAGEB17A8MXT2 336 aa18.71■□□□□ 0.59
CPSF1-209ENST00000532725 FOXE1O00358 373 aaPredicted RBP18.71■□□□□ 0.59
CPSF1-209ENST00000532725 B3GALT2O43825 422 aa18.71■□□□□ 0.59
CPSF1-209ENST00000532725 SH3BGRLO75368 114 aa18.71■□□□□ 0.59
CPSF1-209ENST00000532725 CDC123O75794 336 aaPredicted RBP18.71■□□□□ 0.59
CPSF1-209ENST00000532725 OTCP00480 354 aa18.71■□□□□ 0.59
CPSF1-209ENST00000532725 HPP00738 406 aa18.71■□□□□ 0.59
CPSF1-209ENST00000532725 PDGFAP04085 211 aa18.71■□□□□ 0.59
CPSF1-209ENST00000532725 C8orf89P0DMQ9 161 aa18.71■□□□□ 0.59
CPSF1-209ENST00000532725 COX6A1P12074 109 aa18.71■□□□□ 0.59
CPSF1-209ENST00000532725 RNH1P13489 461 aaKnown RBP18.71■□□□□ 0.59
CPSF1-209ENST00000532725 ZNF10P21506 573 aaPredicted RBP18.71■□□□□ 0.59
CPSF1-209ENST00000532725 PTX3P26022 381 aaPredicted RBP18.71■□□□□ 0.59
CPSF1-209ENST00000532725 MTTPP55157 894 aa18.71■□□□□ 0.59
CPSF1-209ENST00000532725 TGM3Q08188 693 aa18.71■□□□□ 0.59
CPSF1-209ENST00000532725 ZNF844Q08AG5 666 aa18.71■□□□□ 0.59
CPSF1-209ENST00000532725 Q0VFX4 171 aa18.71■□□□□ 0.59
CPSF1-209ENST00000532725 DDX39BQ13838 428 aaKnown RBP18.71■□□□□ 0.59
CPSF1-209ENST00000532725 MFSD4BQ5TF39 518 aa18.71■□□□□ 0.59
CPSF1-209ENST00000532725 GALNT16Q8N428 558 aa18.71■□□□□ 0.59
CPSF1-209ENST00000532725 PPP4R1Q8TF05 950 aa18.71■□□□□ 0.59
CPSF1-209ENST00000532725 METTL21AQ8WXB1 218 aa18.71■□□□□ 0.59
CPSF1-209ENST00000532725 CCDC126Q96EE4 140 aa18.71■□□□□ 0.59
CPSF1-209ENST00000532725 KCNC2Q96PR1 638 aa18.71■□□□□ 0.59
CPSF1-209ENST00000532725 RBCK1Q9BYM8 510 aa18.71■□□□□ 0.59
CPSF1-209ENST00000532725 ZNF700Q9H0M5 742 aa18.71■□□□□ 0.59
CPSF1-209ENST00000532725 MKS1Q9NXB0 559 aa18.71■□□□□ 0.59
CPSF1-209ENST00000532725 TP53TG5Q9Y2B4 290 aa18.71■□□□□ 0.59
CPSF1-209ENST00000532725 PLLPQ9Y342 182 aa18.71■□□□□ 0.59
CPSF1-209ENST00000532725 IGHV1-45A0A0A0MS14 117 aa18.7■□□□□ 0.58
CPSF1-209ENST00000532725 B4GALT2O60909 372 aa18.7■□□□□ 0.58
CPSF1-209ENST00000532725 MYL2P10916 166 aa18.7■□□□□ 0.58
CPSF1-209ENST00000532725 ATP5A1P25705 553 aaKnown RBP18.7■□□□□ 0.58
CPSF1-209ENST00000532725 ARL1P40616 181 aaPredicted RBP18.7■□□□□ 0.58
CPSF1-209ENST00000532725 RPS13P62277 151 aaKnown RBP18.7■□□□□ 0.58
CPSF1-209ENST00000532725 BTG2P78543 158 aa18.7■□□□□ 0.58
CPSF1-209ENST00000532725 FRG2Q64ET8 278 aa18.7■□□□□ 0.58
CPSF1-209ENST00000532725 LETMD1Q6P1Q0 360 aa18.7■□□□□ 0.58
CPSF1-209ENST00000532725 ZNF793Q6ZN11 406 aa18.7■□□□□ 0.58
CPSF1-209ENST00000532725 MYRIPQ8NFW9 859 aa18.7■□□□□ 0.58
CPSF1-209ENST00000532725 RDH11Q8TC12 318 aa18.7■□□□□ 0.58
CPSF1-209ENST00000532725 MTFMTQ96DP5 389 aaKnown RBP18.7■□□□□ 0.58
CPSF1-209ENST00000532725 MAGEB10Q96LZ2 347 aaPredicted RBP18.7■□□□□ 0.58
CPSF1-209ENST00000532725 FRG2BQ96QU4 278 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms