RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 CPED1A4D0V7 1026 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 K7ESF4 209 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 GSTA4O15217 222 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 SSX4O60224 188 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 SULT1C4O75897 302 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 VIPP01282 170 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 PRDX3P30048 256 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 CCT3P49368 545 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 HK3P52790 923 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 ATP6V0D1P61421 351 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 DPTQ07507 201 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 ANGPT1Q15389 498 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 DGUOKQ16854 277 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 LIPMQ5VYY2 423 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 PLEKHG7Q6ZR37 379 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 C11orf96Q7Z7L8 435 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 BPHLQ86WA6 291 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 SLC22A18ASQ8N1D0 253 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 FBXL6Q8N531 539 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 CAMKK1Q8N5S9 505 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 DTWD2Q8NBA8 298 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 HM13Q8TCT9 377 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 CTRCQ99895 268 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 KCNS3Q9BQ31 491 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 DERL2Q9GZP9 239 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 ERVK13-1Q9NX77 482 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 SMPD3Q9NY59 655 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 BTBD3Q9Y2F9 522 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 G3V2L1 256 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 I3L521 148 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 HRO43593 1189 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 SGTAO43765 313 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 SNNO75324 88 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 OR4F21O95013 312 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 GNSP15586 552 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 RABIFP47224 123 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 MAZP56270 477 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 GNG2P59768 71 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 RHDQ02161 417 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 NFYCQ13952 458 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 ADAMTSL4Q6UY14 1074 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 ZYG11AQ6WRX3 759 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 TMPRSS11BQ86T26 416 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 CARM1Q86X55 608 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 OR52B6Q8NGF0 335 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 KIAA1191Q96A73 305 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 UBXN10Q96LJ8 280 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 ZNF347Q96SE7 839 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 INSM2Q96T92 566 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 RIBC2Q9H4K1 309 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 SSU72Q9NP77 194 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 BRD7Q9NPI1 651 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 KIAA1549LQ6ZVL6 1849 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 TEX46H3BTG2 121 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 TLR4O00206 839 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 QSOX1O00391 747 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 KPNA5O15131 536 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 WNT1P04628 370 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 FCER2P06734 321 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 BMP4P12644 408 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 CD27P26842 260 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 AVPR2P30518 371 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 GRK3P35626 688 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 OR2B6P58173 313 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 TUBB3Q13509 450 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 CLCA4Q14CN2 919 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 PYCR3Q53H96 274 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 REP15Q6BDI9 236 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 SH2D5Q6ZV89 423 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 RNF175Q8N4F7 328 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 CNIH3Q8TBE1 160 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 ATOH1Q92858 354 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 ZNF514Q96K75 400 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 GPR78Q96P69 363 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 C9orf16Q9BUW7 83 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 TEX101Q9BY14 249 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 IPPKQ9H8X2 491 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 ZNF224Q9NZL3 707 aa8.33□□□□□ -1.08
LIMCH1-209ENST00000509277 KERAO60938 352 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 TSPAN12O95859 305 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 AMD1P17707 334 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 RPS3P23396 243 aaKnown RBP eCLIP8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 FRG1Q14331 258 aaKnown RBP8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 TRIM61Q5EBN2 209 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 CATSPEREQ5SY80 951 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 HMBOX1Q6NT76 420 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 USP53Q70EK8 1073 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 ZNF765Q7L2R6 523 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 GRAMD2AQ8IUY3 354 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 TMEM145Q8NBT3 493 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 ZNF555Q8NEP9 628 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 METTL6Q8TCB7 284 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 LCN9Q8WX39 176 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 CLDN23Q96B33 292 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 PHF21AQ96BD5 680 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 NUAK2Q9H093 628 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 NANOGQ9H9S0 305 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 RDH14Q9HBH5 336 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 RIC8BQ9NVN3 520 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 TAC3Q9UHF0 121 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms