RNA–Protein interactions for RNA: ENST00000494973.1

APTX-231, Transcript of aprataxin, human

TSL 4

Gene APTX, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-231	ENST00000494973	MAPK12	P53778	367 aa		12.87	□□□□□ -0.35
APTX-231	ENST00000494973	PLA2G16	P53816	162 aa		12.87	□□□□□ -0.35
APTX-231	ENST00000494973	CLNS1A	P54105	237 aa	Known RBP	12.87	□□□□□ -0.35
APTX-231	ENST00000494973	SLC9A5	Q14940	896 aa		12.87	□□□□□ -0.35
APTX-231	ENST00000494973	KIAA0040	Q15053	153 aa		12.87	□□□□□ -0.35
APTX-231	ENST00000494973	RSPO4	Q2I0M5	234 aa	Predicted RBP	12.87	□□□□□ -0.35
APTX-231	ENST00000494973	PDCD4	Q53EL6	469 aa	Known RBP	12.87	□□□□□ -0.35
APTX-231	ENST00000494973	CCNYL2	Q5T2Q4	361 aa		12.87	□□□□□ -0.35
APTX-231	ENST00000494973	DCAF12	Q5T6F0	453 aa		12.87	□□□□□ -0.35
APTX-231	ENST00000494973	NOXRED1	Q6NXP6	359 aa		12.87	□□□□□ -0.35
APTX-231	ENST00000494973	SLCO6A1	Q86UG4	719 aa		12.87	□□□□□ -0.35
APTX-231	ENST00000494973	MIER2	Q8N344	545 aa		12.87	□□□□□ -0.35
APTX-231	ENST00000494973	BMPER	Q8N8U9	685 aa		12.87	□□□□□ -0.35
APTX-231	ENST00000494973	KCT2	Q8NC54	265 aa		12.87	□□□□□ -0.35
APTX-231	ENST00000494973	OR1L3	Q8NH93	324 aa		12.87	□□□□□ -0.35
APTX-231	ENST00000494973	ZCCHC10	Q8TBK6	192 aa		12.87	□□□□□ -0.35
APTX-231	ENST00000494973	FAM122A	Q96E09	287 aa		12.87	□□□□□ -0.35
APTX-231	ENST00000494973	C11orf24	Q96F05	449 aa	Predicted RBP	12.87	□□□□□ -0.35
APTX-231	ENST00000494973	SMIM10	Q96HG1	83 aa		12.87	□□□□□ -0.35
APTX-231	ENST00000494973	OR52B2	Q96RD2	323 aa		12.87	□□□□□ -0.35
APTX-231	ENST00000494973	ZBTB18	Q99592	522 aa		12.87	□□□□□ -0.35
APTX-231	ENST00000494973	DPH2	Q9BQC3	489 aa	Predicted RBP	12.87	□□□□□ -0.35
APTX-231	ENST00000494973	WDR41	Q9HAD4	459 aa		12.87	□□□□□ -0.35
APTX-231	ENST00000494973	LYRM4	Q9HD34	91 aa		12.87	□□□□□ -0.35
APTX-231	ENST00000494973	AIG1	Q9NVV5	245 aa		12.87	□□□□□ -0.35
APTX-231	ENST00000494973	SLC39A1	Q9NY26	324 aa		12.87	□□□□□ -0.35
APTX-231	ENST00000494973	RAPGEFL1	Q9UHV5	662 aa		12.87	□□□□□ -0.35
APTX-231	ENST00000494973	POLR3H	Q9Y535	204 aa	Predicted RBP	12.87	□□□□□ -0.35
APTX-231	ENST00000494973	COL27A1	Q8IZC6	1860 aa	Predicted RBP	12.87	□□□□□ -0.35
APTX-231	ENST00000494973	DMD	P11532	3685 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973		H3BMH7	237 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973	PLD2	O14939	933 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973	GALR3	O60755	368 aa	Predicted RBP	12.86	□□□□□ -0.35
APTX-231	ENST00000494973	SCRG1	O75711	98 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973	KLHL18	O94889	574 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973	TBX6	O95947	436 aa	Predicted RBP	12.86	□□□□□ -0.35
APTX-231	ENST00000494973	ANXA4	P09525	319 aa	Predicted RBP	12.86	□□□□□ -0.35
APTX-231	ENST00000494973	NCF2	P19878	526 aa	Predicted RBP	12.86	□□□□□ -0.35
APTX-231	ENST00000494973	IL10	P22301	178 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973	ATP5A1	P25705	553 aa	Known RBP	12.86	□□□□□ -0.35
APTX-231	ENST00000494973	TLX1	P31314	330 aa	Predicted RBP	12.86	□□□□□ -0.35
APTX-231	ENST00000494973	BSG	P35613	385 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973	HPCAL1	P37235	193 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973	BUD31	P41223	144 aa	Predicted RBP	12.86	□□□□□ -0.35
APTX-231	ENST00000494973	RAB8A	P61006	207 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973	BTN3A2	P78410	334 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973	HEPACAM	Q14CZ8	416 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973	MAPRE2	Q15555	327 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973	DPY19L1	Q2PZI1	675 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973	DEFB134	Q4QY38	66 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973	RFTN2	Q52LD8	501 aa	Predicted RBP	12.86	□□□□□ -0.35
APTX-231	ENST00000494973	IL23R	Q5VWK5	629 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973	RHBDD2	Q6NTF9	364 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973	R3HCC1L	Q7Z5L2	792 aa	Known RBP	12.86	□□□□□ -0.35
APTX-231	ENST00000494973	RNF175	Q8N4F7	328 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973	NATD1	Q8N6N6	113 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973	ACOT4	Q8N9L9	421 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973	GLB1L3	Q8NCI6	653 aa	Predicted RBP	12.86	□□□□□ -0.35
APTX-231	ENST00000494973	C10orf90	Q96M02	699 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973	LRFN5	Q96NI6	719 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973	LRRC37B	Q96QE4	947 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973	TAAR9	Q96RI9	348 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973	PRPF18	Q99633	342 aa	Known RBP	12.86	□□□□□ -0.35
APTX-231	ENST00000494973	BRINP2	Q9C0B6	783 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973	ACTR5	Q9H9F9	607 aa	Predicted RBP	12.86	□□□□□ -0.35
APTX-231	ENST00000494973	MYNN	Q9NPC7	610 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973	SDR39U1	Q9NRG7	319 aa	Predicted RBP	12.86	□□□□□ -0.35
APTX-231	ENST00000494973	ZIM2	Q9NZV7	527 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973	HEY2	Q9UBP5	337 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973	MRPS33	Q9Y291	106 aa	Known RBP	12.86	□□□□□ -0.35
APTX-231	ENST00000494973	PCDHGA8	Q9Y5G5	932 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973	PCDHGA3	Q9Y5H0	932 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973	CEP250	Q9BV73	2442 aa		12.86	□□□□□ -0.35
APTX-231	ENST00000494973		A0A0A6YYD5	115 aa		12.85	□□□□□ -0.35
APTX-231	ENST00000494973	DYTN	A2CJ06	578 aa		12.85	□□□□□ -0.35
APTX-231	ENST00000494973	PSMD12	O00232	456 aa	Predicted RBP	12.85	□□□□□ -0.35
APTX-231	ENST00000494973	SAP18	O00422	153 aa	Known RBP	12.85	□□□□□ -0.35
APTX-231	ENST00000494973	CASC3	O15234	703 aa	Known RBP	12.85	□□□□□ -0.35
APTX-231	ENST00000494973	ZNF749	O43361	778 aa		12.85	□□□□□ -0.35
APTX-231	ENST00000494973	SH3BGRL	O75368	114 aa		12.85	□□□□□ -0.35
APTX-231	ENST00000494973	KLK1	P06870	262 aa		12.85	□□□□□ -0.35
APTX-231	ENST00000494973	BCKDHA	P12694	445 aa		12.85	□□□□□ -0.35
APTX-231	ENST00000494973	PRPS1L1	P21108	318 aa		12.85	□□□□□ -0.35
APTX-231	ENST00000494973	GCGR	P47871	477 aa		12.85	□□□□□ -0.35
APTX-231	ENST00000494973	C21orf58	P58505	322 aa		12.85	□□□□□ -0.35
APTX-231	ENST00000494973	UBE3D	Q7Z6J8	389 aa		12.85	□□□□□ -0.35
APTX-231	ENST00000494973	TMEM132C	Q8N3T6	1108 aa		12.85	□□□□□ -0.35
APTX-231	ENST00000494973	LIX1	Q8N485	282 aa		12.85	□□□□□ -0.35
APTX-231	ENST00000494973	ARHGEF39	Q8N4T4	335 aa		12.85	□□□□□ -0.35
APTX-231	ENST00000494973	CPSF7	Q8N684	471 aa	Known RBP	12.85	□□□□□ -0.35
APTX-231	ENST00000494973	CLIP3	Q96DZ5	547 aa		12.85	□□□□□ -0.35
APTX-231	ENST00000494973	MTERF3	Q96E29	417 aa		12.85	□□□□□ -0.35
APTX-231	ENST00000494973	ZNF764	Q96H86	408 aa	Predicted RBP	12.85	□□□□□ -0.35
APTX-231	ENST00000494973	C1orf50	Q9BV19	199 aa		12.85	□□□□□ -0.35
APTX-231	ENST00000494973	ZNF717	Q9BY31	904 aa	Predicted RBP	12.85	□□□□□ -0.35
APTX-231	ENST00000494973	SPRTN	Q9H040	489 aa	Predicted RBP	12.85	□□□□□ -0.35
APTX-231	ENST00000494973	KLHL31	Q9H511	634 aa		12.85	□□□□□ -0.35
APTX-231	ENST00000494973	SYNPO2L	Q9H987	977 aa		12.85	□□□□□ -0.35
APTX-231	ENST00000494973	PRDM7	Q9NQW5	492 aa		12.85	□□□□□ -0.35
APTX-231	ENST00000494973	OCIAD1	Q9NX40	245 aa		12.85	□□□□□ -0.35

Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms