RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 PRDM9Q9NQV7 894 aa21.58■■□□□ 1.05
COL9A3-213ENST00000489045 ANKRD10Q9NXR5 420 aa21.58■■□□□ 1.05
COL9A3-213ENST00000489045 CENPEQ02224 2701 aa21.58■■□□□ 1.05
COL9A3-213ENST00000489045 IGKV3D-11A0A0A0MRZ8 115 aa21.57■■□□□ 1.04
COL9A3-213ENST00000489045 TCRBV16S1A1N1A0A5B0 115 aa21.57■■□□□ 1.04
COL9A3-213ENST00000489045 ERI3O43414 337 aaKnown RBP21.57■■□□□ 1.04
COL9A3-213ENST00000489045 S100BP04271 92 aaPredicted RBP21.57■■□□□ 1.04
COL9A3-213ENST00000489045 KCNK10P57789 538 aa21.57■■□□□ 1.04
COL9A3-213ENST00000489045 TAS2R50P59544 299 aa21.57■■□□□ 1.04
COL9A3-213ENST00000489045 SLC7A5Q01650 507 aa21.57■■□□□ 1.04
COL9A3-213ENST00000489045 SRSF11Q05519 484 aaKnown RBP21.57■■□□□ 1.04
COL9A3-213ENST00000489045 PDK4Q16654 411 aa21.57■■□□□ 1.04
COL9A3-213ENST00000489045 ADNP2Q6IQ32 1131 aa21.57■■□□□ 1.04
COL9A3-213ENST00000489045 RAPH1Q70E73 1250 aa21.57■■□□□ 1.04
COL9A3-213ENST00000489045 MAMDC2Q7Z304 686 aaPredicted RBP21.57■■□□□ 1.04
COL9A3-213ENST00000489045 ELP5Q8TE02 316 aa21.57■■□□□ 1.04
COL9A3-213ENST00000489045 SIGLEC12Q96PQ1 595 aa21.57■■□□□ 1.04
COL9A3-213ENST00000489045 UTP23Q9BRU9 249 aaKnown RBP21.57■■□□□ 1.04
COL9A3-213ENST00000489045 PITHD1Q9GZP4 211 aaPredicted RBP21.57■■□□□ 1.04
COL9A3-213ENST00000489045 EHD1Q9H4M9 534 aa21.57■■□□□ 1.04
COL9A3-213ENST00000489045 ALG9Q9H6U8 611 aa21.57■■□□□ 1.04
COL9A3-213ENST00000489045 NECTIN3Q9NQS3 549 aa21.57■■□□□ 1.04
COL9A3-213ENST00000489045 PTBP2Q9UKA9 531 aaKnown RBP21.57■■□□□ 1.04
COL9A3-213ENST00000489045 ESYT3A0FGR9 886 aa21.56■■□□□ 1.04
COL9A3-213ENST00000489045 LRIT2A6NDA9 550 aa21.56■■□□□ 1.04
COL9A3-213ENST00000489045 ANKDD1BA6NHY2 528 aa21.56■■□□□ 1.04
COL9A3-213ENST00000489045 SAGE2PA6NJ88 616 aa21.56■■□□□ 1.04
COL9A3-213ENST00000489045 CLEC3AO75596 197 aa21.56■■□□□ 1.04
COL9A3-213ENST00000489045 CRYABP02511 175 aaKnown RBP21.56■■□□□ 1.04
COL9A3-213ENST00000489045 SLC35E2BP0CK96 405 aa21.56■■□□□ 1.04
COL9A3-213ENST00000489045 PMP22Q01453 160 aa21.56■■□□□ 1.04
COL9A3-213ENST00000489045 CKAP4Q07065 602 aaKnown RBP21.56■■□□□ 1.04
COL9A3-213ENST00000489045 DLG1Q12959 904 aa21.56■■□□□ 1.04
COL9A3-213ENST00000489045 NAB1Q13506 487 aa21.56■■□□□ 1.04
COL9A3-213ENST00000489045 XKR6Q5GH73 641 aa21.56■■□□□ 1.04
COL9A3-213ENST00000489045 C8orf74Q6P047 294 aa21.56■■□□□ 1.04
COL9A3-213ENST00000489045 VN1R5Q7Z5H4 357 aa21.56■■□□□ 1.04
COL9A3-213ENST00000489045 MDS2Q8NDY4 140 aa21.56■■□□□ 1.04
COL9A3-213ENST00000489045 DNAJB8Q8NHS0 232 aa21.56■■□□□ 1.04
COL9A3-213ENST00000489045 PTCD3Q96EY7 689 aaKnown RBP21.56■■□□□ 1.04
COL9A3-213ENST00000489045 SEC16BQ96JE7 1060 aa21.56■■□□□ 1.04
COL9A3-213ENST00000489045 ASB1Q9Y576 335 aa21.56■■□□□ 1.04
COL9A3-213ENST00000489045 GABRR3A8MPY1 467 aa21.55■■□□□ 1.04
COL9A3-213ENST00000489045 CCNT2O60583 730 aaKnown RBP21.55■■□□□ 1.04
COL9A3-213ENST00000489045 TBX6O95947 436 aaPredicted RBP21.55■■□□□ 1.04
COL9A3-213ENST00000489045 STSP08842 583 aa21.55■■□□□ 1.04
COL9A3-213ENST00000489045 EPORP19235 508 aa21.55■■□□□ 1.04
COL9A3-213ENST00000489045 TFEBP19484 476 aa21.55■■□□□ 1.04
COL9A3-213ENST00000489045 CD22P20273 847 aa21.55■■□□□ 1.04
COL9A3-213ENST00000489045 MST1P26927 711 aa21.55■■□□□ 1.04
COL9A3-213ENST00000489045 CD96P40200 585 aa21.55■■□□□ 1.04
COL9A3-213ENST00000489045 KCNC1P48547 511 aa21.55■■□□□ 1.04
COL9A3-213ENST00000489045 GUCY2DQ02846 1103 aa21.55■■□□□ 1.04
COL9A3-213ENST00000489045 RUNX2Q13950 521 aa21.55■■□□□ 1.04
COL9A3-213ENST00000489045 DOC2AQ14183 400 aa21.55■■□□□ 1.04
COL9A3-213ENST00000489045 OR1C1Q15619 314 aa21.55■■□□□ 1.04
COL9A3-213ENST00000489045 ADPRMQ3LIE5 342 aa21.55■■□□□ 1.04
COL9A3-213ENST00000489045 GFRALQ6UXV0 394 aa21.55■■□□□ 1.04
COL9A3-213ENST00000489045 TBC1D1Q86TI0 1168 aaPredicted RBP21.55■■□□□ 1.04
COL9A3-213ENST00000489045 LGI4Q8N135 537 aa21.55■■□□□ 1.04
COL9A3-213ENST00000489045 ARMC2Q8NEN0 867 aa21.55■■□□□ 1.04
COL9A3-213ENST00000489045 OR2L5Q8NG80 312 aa21.55■■□□□ 1.04
COL9A3-213ENST00000489045 WDR34Q96EX3 536 aa21.55■■□□□ 1.04
COL9A3-213ENST00000489045 QRFPRQ96P65 431 aa21.55■■□□□ 1.04
COL9A3-213ENST00000489045 EFCAB11Q9BUY7 163 aa21.55■■□□□ 1.04
COL9A3-213ENST00000489045 NPLQ9BXD5 320 aaPredicted RBP21.55■■□□□ 1.04
COL9A3-213ENST00000489045 HES7Q9BYE0 225 aa21.55■■□□□ 1.04
COL9A3-213ENST00000489045 CD244Q9BZW8 370 aa21.55■■□□□ 1.04
COL9A3-213ENST00000489045 CDCP1Q9H5V8 836 aa21.55■■□□□ 1.04
COL9A3-213ENST00000489045 NUDT4Q9NZJ9 180 aa21.55■■□□□ 1.04
COL9A3-213ENST00000489045 ZNF490Q9ULM2 529 aaPredicted RBP21.55■■□□□ 1.04
COL9A3-213ENST00000489045 MMACHCQ9Y4U1 282 aa21.55■■□□□ 1.04
COL9A3-213ENST00000489045 TEX15Q9BXT5 2789 aa21.54■■□□□ 1.04
COL9A3-213ENST00000489045 A8MUA0 341 aa21.54■■□□□ 1.04
COL9A3-213ENST00000489045 PLA2G16P53816 162 aa21.54■■□□□ 1.04
COL9A3-213ENST00000489045 PER3P56645 1201 aa21.54■■□□□ 1.04
COL9A3-213ENST00000489045 SPINK14Q6IE38 97 aa21.54■■□□□ 1.04
COL9A3-213ENST00000489045 LRRC70Q7Z2Q7 622 aa21.54■■□□□ 1.04
COL9A3-213ENST00000489045 STAG3L4Q8TBR4 150 aa21.54■■□□□ 1.04
COL9A3-213ENST00000489045 REXO4Q9GZR2 422 aaKnown RBP21.54■■□□□ 1.04
COL9A3-213ENST00000489045 NMRAL1Q9HBL8 299 aa21.54■■□□□ 1.04
COL9A3-213ENST00000489045 KLHL1Q9NR64 748 aa21.54■■□□□ 1.04
COL9A3-213ENST00000489045 PCDHGB6Q9Y5F9 930 aa21.54■■□□□ 1.04
COL9A3-213ENST00000489045 A0A088AWK7 358 aa21.53■■□□□ 1.04
COL9A3-213ENST00000489045 SUPT3HB4E1H0 165 aa21.53■■□□□ 1.04
COL9A3-213ENST00000489045 B3GALT2O43825 422 aa21.53■■□□□ 1.04
COL9A3-213ENST00000489045 SUPT3HO75486 399 aa21.53■■□□□ 1.04
COL9A3-213ENST00000489045 UNC5CO95185 931 aa21.53■■□□□ 1.04
COL9A3-213ENST00000489045 LTA4HP09960 611 aaKnown RBP21.53■■□□□ 1.04
COL9A3-213ENST00000489045 ZNF10P21506 573 aaPredicted RBP21.53■■□□□ 1.04
COL9A3-213ENST00000489045 COL8A1P27658 744 aa21.53■■□□□ 1.04
COL9A3-213ENST00000489045 CRABP2P29373 138 aa21.53■■□□□ 1.04
COL9A3-213ENST00000489045 HPDP32754 393 aaPredicted RBP21.53■■□□□ 1.04
COL9A3-213ENST00000489045 RAB38P57729 211 aa21.53■■□□□ 1.04
COL9A3-213ENST00000489045 OC90Q02509 493 aaPredicted RBP21.53■■□□□ 1.04
COL9A3-213ENST00000489045 IRF8Q02556 426 aa21.53■■□□□ 1.04
COL9A3-213ENST00000489045 CHIT1Q13231 466 aa21.53■■□□□ 1.04
COL9A3-213ENST00000489045 C1QL3Q5VWW1 255 aa21.53■■□□□ 1.04
COL9A3-213ENST00000489045 TRIM40Q6P9F5 258 aa21.53■■□□□ 1.04
COL9A3-213ENST00000489045 ISCA2Q86U28 154 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms