RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 CALCAP01258 141 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 FAM86B2P0C5J1 330 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 FDPSP14324 419 aaKnown RBP2.34□□□□□ -2.03
VPS50-216ENST00000484954 GOT1P17174 413 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 CTNNA2P26232 953 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 MATKP42679 507 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 RAD52P43351 418 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 CRKLP46109 303 aaKnown RBP2.34□□□□□ -2.03
VPS50-216ENST00000484954 CDX1P47902 265 aaPredicted RBP2.34□□□□□ -2.03
VPS50-216ENST00000484954 CRYBA2P53672 197 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 BACE1P56817 501 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 PTENP60484 403 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 TNK1Q13470 666 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 ZNF273Q14593 569 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 COG2Q14746 738 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 CCL14Q16627 93 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 HYAL4Q2M3T9 481 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 FAM174BQ3ZCQ3 159 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 KRT80Q6KB66 452 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 RPUSD3Q6P087 351 aaKnown RBP2.34□□□□□ -2.03
VPS50-216ENST00000484954 Q6ZVH6 145 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 GPR141Q7Z602 305 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 OR6T1Q8NGN1 323 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 FLVCR1-AS1Q8TAF5 88 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 VPS33AQ96AX1 596 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 RMDN1Q96DB5 314 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 RMDN2Q96LZ7 410 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 APOL2Q9BQE5 337 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 SLC25A23Q9BV35 468 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 LIME1Q9H400 295 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 MARCH7Q9H992 704 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 PLEKHA3Q9HB20 300 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 DHRS4-AS1Q9P1J3 65 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 NYAP2Q9P242 653 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 SPATA2Q9UM82 520 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 NCKAP1Q9Y2A7 1128 aa2.34□□□□□ -2.03
VPS50-216ENST00000484954 KAT6BQ8WYB5 2073 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 TEX48A0A1B0GUV7 120 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 ZNF732B4DXR9 585 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 TMEM150CB9EJG8 249 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 IGHG1P01857 330 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 SPP1P10451 314 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 ERCC2P18074 760 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 PEX3P56589 373 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 LYZP61626 148 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 RPS27AP62979 156 aaKnown RBP2.33□□□□□ -2.04
VPS50-216ENST00000484954 TOMM20Q15388 145 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 FAM46CQ5VWP2 391 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 ZNF770Q6IQ21 691 aaPredicted RBP2.33□□□□□ -2.04
VPS50-216ENST00000484954 NEPROQ6NW34 567 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 MACC1Q6ZN28 852 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 C17orf107Q6ZR85 190 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 TMUB2Q71RG4 321 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 ABI3BPQ7Z7G0 1075 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 NAXDQ8IW45 347 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 HSCBQ8IWL3 235 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 CCAR2Q8N163 923 aaKnown RBP2.33□□□□□ -2.04
VPS50-216ENST00000484954 ZNRF1Q8ND25 227 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 OCC1Q8TAD7 63 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 SMPDL3AQ92484 453 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 RAD54LQ92698 747 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 ST6GALNAC6Q969X2 333 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 RUNDC3BQ96NL0 473 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 ALKBH3Q96Q83 286 aaPredicted RBP2.33□□□□□ -2.04
VPS50-216ENST00000484954 YTHDF1Q9BYJ9 559 aaKnown RBP2.33□□□□□ -2.04
VPS50-216ENST00000484954 TXLNGYQ9BZA5 131 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 DPEP2Q9H4A9 486 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 C10orf88Q9H8K7 445 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 RPF1Q9H9Y2 349 aaKnown RBP2.33□□□□□ -2.04
VPS50-216ENST00000484954 CHCHD3Q9NX63 227 aaKnown RBP2.33□□□□□ -2.04
VPS50-216ENST00000484954 ANAPC11Q9NYG5 84 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 ARMCX1Q9P291 453 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 DBF4Q9UBU7 674 aaPredicted RBP2.33□□□□□ -2.04
VPS50-216ENST00000484954 CLIP2Q9UDT6 1046 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 PRO0461Q9UI25 63 aa2.33□□□□□ -2.04
VPS50-216ENST00000484954 NIP7Q9Y221 180 aaKnown RBP eCLIP2.33□□□□□ -2.04
VPS50-216ENST00000484954 SYNDIG1LA6NDD5 238 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 IGLON5A6NGN9 336 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 A8MXE2 369 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 FLRT2O43155 660 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 PPIP5K2O43314 1243 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 FCGR3BO75015 233 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 KRT6AP02538 564 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 KRT6BP04259 564 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 ANKRD34CP0C6C1 535 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 ZBTB25P24278 435 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 KRT6CP48668 564 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 CNTN1Q12860 1018 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 RASA2Q15283 850 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 MAPK11Q15759 364 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 ECSCRQ19T08 205 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 SLC22A6Q4U2R8 563 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 C6orf136Q5SQH8 315 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 MUC21Q5SSG8 566 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 DDX59Q5T1V6 619 aaKnown RBP eCLIP2.32□□□□□ -2.04
VPS50-216ENST00000484954 LINC00242Q5T6M2 205 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 MFSD4BQ5TF39 518 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 KLHL10Q6JEL2 608 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 C15orf52Q6ZUT6 534 aaKnown RBP2.32□□□□□ -2.04
VPS50-216ENST00000484954 SERINC5Q86VE9 423 aa2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms