RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 AVPR1BP47901 424 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 CCNG1P51959 295 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 FOXL2P58012 376 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 AIMP2Q13155 320 aaKnown RBP16.77■□□□□ 0.28
COL7A1-205ENST00000465238 FAM53BQ14153 422 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 E2F2Q14209 437 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 RBBP7Q16576 425 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 C4orf17Q53FE4 359 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 ZNF678Q5SXM1 525 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 GRHL2Q6ISB3 625 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 TMEM214Q6NUQ4 689 aaKnown RBP16.77■□□□□ 0.28
COL7A1-205ENST00000465238 MED27Q6P2C8 311 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.77■□□□□ 0.28
COL7A1-205ENST00000465238 ZADH2Q8N4Q0 377 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 KCT2Q8NC54 265 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 ZCCHC10Q8TBK6 192 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 ZNF483Q8TF39 744 aaPredicted RBP16.77■□□□□ 0.28
COL7A1-205ENST00000465238 SNRNP40Q96DI7 357 aaKnown RBP16.77■□□□□ 0.28
COL7A1-205ENST00000465238 PGM2Q96G03 612 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 SEC16BQ96JE7 1060 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 NSUN5Q96P11 429 aaKnown RBP16.77■□□□□ 0.28
COL7A1-205ENST00000465238 DRC3Q9H069 523 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 STMN4Q9H169 189 aaPredicted RBP16.77■□□□□ 0.28
COL7A1-205ENST00000465238 SLC26A1Q9H2B4 701 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 SEMA4BQ9NPR2 832 aaPredicted RBP16.77■□□□□ 0.28
COL7A1-205ENST00000465238 NXT1Q9UKK6 140 aaKnown RBP16.77■□□□□ 0.28
COL7A1-205ENST00000465238 MAU2Q9Y6X3 613 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 CENPEQ02224 2701 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 A0A0A6YYC8 382 aaPredicted RBP16.76■□□□□ 0.27
COL7A1-205ENST00000465238 I3L1I5 382 aaPredicted RBP16.76■□□□□ 0.27
COL7A1-205ENST00000465238 OR7A17O14581 309 aa16.76■□□□□ 0.27
COL7A1-205ENST00000465238 CLDN9O95484 217 aa16.76■□□□□ 0.27
COL7A1-205ENST00000465238 SERPINA6P08185 405 aa16.76■□□□□ 0.27
COL7A1-205ENST00000465238 PCNAP12004 261 aa16.76■□□□□ 0.27
COL7A1-205ENST00000465238 CDH13P55290 713 aa16.76■□□□□ 0.27
COL7A1-205ENST00000465238 MRPL49Q13405 166 aaKnown RBP16.76■□□□□ 0.27
COL7A1-205ENST00000465238 NKG7Q16617 165 aa16.76■□□□□ 0.27
COL7A1-205ENST00000465238 EIF2S3LQ2VIR3 472 aaKnown RBP16.76■□□□□ 0.27
COL7A1-205ENST00000465238 UNC50Q53HI1 259 aa16.76■□□□□ 0.27
COL7A1-205ENST00000465238 MILR1Q7Z6M3 343 aa16.76■□□□□ 0.27
COL7A1-205ENST00000465238 ARHGEF39Q8N4T4 335 aa16.76■□□□□ 0.27
COL7A1-205ENST00000465238 DTWD1Q8N5C7 304 aa16.76■□□□□ 0.27
COL7A1-205ENST00000465238 ARMC2Q8NEN0 867 aa16.76■□□□□ 0.27
COL7A1-205ENST00000465238 CREB3L4Q8TEY5 395 aa16.76■□□□□ 0.27
COL7A1-205ENST00000465238 ZDHHC19Q8WVZ1 309 aaPredicted RBP16.76■□□□□ 0.27
COL7A1-205ENST00000465238 REPS1Q96D71 796 aa16.76■□□□□ 0.27
COL7A1-205ENST00000465238 L3HYPDHQ96EM0 354 aa16.76■□□□□ 0.27
COL7A1-205ENST00000465238 MMABQ96EY8 250 aaPredicted RBP16.76■□□□□ 0.27
COL7A1-205ENST00000465238 TMEM237Q96Q45 408 aa16.76■□□□□ 0.27
COL7A1-205ENST00000465238 NTMT1Q9BV86 223 aa16.76■□□□□ 0.27
COL7A1-205ENST00000465238 ILKAPQ9H0C8 392 aaPredicted RBP16.76■□□□□ 0.27
COL7A1-205ENST00000465238 RHBGQ9H310 441 aa16.76■□□□□ 0.27
COL7A1-205ENST00000465238 ANKHQ9HCJ1 492 aa16.76■□□□□ 0.27
COL7A1-205ENST00000465238 MRPS2Q9Y399 296 aaKnown RBP16.76■□□□□ 0.27
COL7A1-205ENST00000465238 SLC22A7Q9Y694 548 aa16.76■□□□□ 0.27
COL7A1-205ENST00000465238 FOXS1O43638 330 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 CLEC3AO75596 197 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 DDAH2O95865 285 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 OTCP00480 354 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 CREB1P16220 341 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 FBLP22087 321 aaKnown RBP16.75■□□□□ 0.27
COL7A1-205ENST00000465238 SERPINB1P30740 379 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 HPDP32754 393 aaPredicted RBP16.75■□□□□ 0.27
COL7A1-205ENST00000465238 STXBP1P61764 594 aaKnown RBP16.75■□□□□ 0.27
COL7A1-205ENST00000465238 CLCQ05315 142 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 HERC3Q15034 1050 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 TOR1AIP1Q5JTV8 583 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 RPS27LQ71UM5 84 aaKnown RBP16.75■□□□□ 0.27
COL7A1-205ENST00000465238 ABHD13Q7L211 337 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 EXOC3L1Q86VI1 746 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 TMEM151BQ8IW70 566 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 LAS2Q8IYD9 372 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 CISD2Q8N5K1 135 aaKnown RBP16.75■□□□□ 0.27
COL7A1-205ENST00000465238 CCNYL1Q8N7R7 359 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 L3MBTL4Q8NA19 623 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 OR52B6Q8NGF0 335 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 OR9A4Q8NGU2 314 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 PRR7Q8TB68 274 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 TCP10LQ8TDR4 215 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 TRPC4APQ8TEL6 797 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 C19orf60Q96EN9 201 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 VPS50Q96JG6 964 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 MAGEB10Q96LZ2 347 aaPredicted RBP16.75■□□□□ 0.27
COL7A1-205ENST00000465238 FAM111AQ96PZ2 611 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 SPSB2Q99619 263 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 YIPF2Q9BWQ6 316 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 SLC6A16Q9GZN6 736 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 ZBTB26Q9HCK0 441 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 ASF1BQ9NVP2 202 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 ADGRE2Q9UHX3 823 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 FBXL4Q9UKA2 621 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 RNF11Q9Y3C5 154 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 PCDHGA11Q9Y5H2 935 aa16.75■□□□□ 0.27
COL7A1-205ENST00000465238 MASP2O00187 686 aa16.74■□□□□ 0.27
COL7A1-205ENST00000465238 NSA2O95478 260 aaKnown RBP16.74■□□□□ 0.27
COL7A1-205ENST00000465238 H2AFXP16104 143 aaPredicted RBP16.74■□□□□ 0.27
COL7A1-205ENST00000465238 ALOX12P18054 663 aa16.74■□□□□ 0.27
COL7A1-205ENST00000465238 IL1RNP18510 177 aa16.74■□□□□ 0.27
COL7A1-205ENST00000465238 TSPAN8P19075 237 aa16.74■□□□□ 0.27
COL7A1-205ENST00000465238 ITGA3P26006 1051 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms