RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 CDH24Q86UP0 819 aa21.11■□□□□ 0.97
USP4-208ENST00000464168 CD163Q86VB7 1156 aa21.11■□□□□ 0.97
USP4-208ENST00000464168 THOC6Q86W42 341 aaKnown RBP21.11■□□□□ 0.97
USP4-208ENST00000464168 CA13Q8N1Q1 262 aa21.11■□□□□ 0.97
USP4-208ENST00000464168 ARMC2Q8NEN0 867 aa21.11■□□□□ 0.97
USP4-208ENST00000464168 CREB3L4Q8TEY5 395 aa21.11■□□□□ 0.97
USP4-208ENST00000464168 PDLIM5Q96HC4 596 aaKnown RBP21.11■□□□□ 0.97
USP4-208ENST00000464168 PELI2Q9HAT8 420 aa21.11■□□□□ 0.97
USP4-208ENST00000464168 JRKLQ9Y4A0 524 aa21.11■□□□□ 0.97
USP4-208ENST00000464168 MAP1AP78559 2803 aaPredicted RBP21.1■□□□□ 0.97
USP4-208ENST00000464168 TRBV11-1A0A0K0K1C0 115 aa21.1■□□□□ 0.97
USP4-208ENST00000464168 SERPINA6P08185 405 aa21.1■□□□□ 0.97
USP4-208ENST00000464168 TFEBP19484 476 aa21.1■□□□□ 0.97
USP4-208ENST00000464168 RBBP5Q15291 538 aaKnown RBP21.1■□□□□ 0.97
USP4-208ENST00000464168 SPNS3Q6ZMD2 512 aa21.1■□□□□ 0.97
USP4-208ENST00000464168 CEP128Q6ZU80 1094 aa21.1■□□□□ 0.97
USP4-208ENST00000464168 GPATCH11Q8N954 259 aa21.1■□□□□ 0.97
USP4-208ENST00000464168 ZFP62Q8NB50 900 aaPredicted RBP21.1■□□□□ 0.97
USP4-208ENST00000464168 B3GNT7Q8NFL0 401 aa21.1■□□□□ 0.97
USP4-208ENST00000464168 GRK7Q8WTQ7 553 aa21.1■□□□□ 0.97
USP4-208ENST00000464168 CERS2Q96G23 380 aa21.1■□□□□ 0.97
USP4-208ENST00000464168 NAP1L3Q99457 506 aaPredicted RBP21.1■□□□□ 0.97
USP4-208ENST00000464168 AIF1LQ9BQI0 150 aa21.1■□□□□ 0.97
USP4-208ENST00000464168 ZNF223Q9UK11 482 aaPredicted RBP21.1■□□□□ 0.97
USP4-208ENST00000464168 PPP2R2CQ9Y2T4 447 aa21.1■□□□□ 0.97
USP4-208ENST00000464168 PGRMC1O00264 195 aaKnown RBP21.09■□□□□ 0.97
USP4-208ENST00000464168 NRDCO43847 1150 aa21.09■□□□□ 0.97
USP4-208ENST00000464168 CDC40O60508 579 aaKnown RBP eCLIP21.09■□□□□ 0.97
USP4-208ENST00000464168 MYO1DO94832 1006 aa21.09■□□□□ 0.97
USP4-208ENST00000464168 FNTAP49354 379 aa21.09■□□□□ 0.97
USP4-208ENST00000464168 CLCN2P51788 898 aa21.09■□□□□ 0.97
USP4-208ENST00000464168 PPP1R3AQ16821 1122 aa21.09■□□□□ 0.97
USP4-208ENST00000464168 TOR1AIP1Q5JTV8 583 aa21.09■□□□□ 0.97
USP4-208ENST00000464168 LRRC8AQ8IWT6 810 aa21.09■□□□□ 0.97
USP4-208ENST00000464168 CYP4Z2PQ8N1L4 340 aa21.09■□□□□ 0.97
USP4-208ENST00000464168 TMEM156Q8N614 296 aa21.09■□□□□ 0.97
USP4-208ENST00000464168 PDLIM2Q96JY6 352 aa21.09■□□□□ 0.97
USP4-208ENST00000464168 NAT9Q9BTE0 207 aa21.09■□□□□ 0.97
USP4-208ENST00000464168 PLSCR2Q9NRY7 297 aa21.09■□□□□ 0.97
USP4-208ENST00000464168 FBXW2Q9UKT8 454 aa21.09■□□□□ 0.97
USP4-208ENST00000464168 PPIEQ9UNP9 301 aaKnown RBP21.09■□□□□ 0.97
USP4-208ENST00000464168 SLC22A14Q9Y267 594 aa21.09■□□□□ 0.97
USP4-208ENST00000464168 DYRK1BQ9Y463 629 aa21.09■□□□□ 0.97
USP4-208ENST00000464168 MMACHCQ9Y4U1 282 aa21.09■□□□□ 0.97
USP4-208ENST00000464168 ITGA10O75578 1167 aa21.08■□□□□ 0.97
USP4-208ENST00000464168 IGFBP2P18065 325 aa21.08■□□□□ 0.97
USP4-208ENST00000464168 GPR143P51810 404 aa21.08■□□□□ 0.97
USP4-208ENST00000464168 GPR85P60893 370 aa21.08■□□□□ 0.97
USP4-208ENST00000464168 BTN3A2P78410 334 aa21.08■□□□□ 0.97
USP4-208ENST00000464168 CCZ1BP86790 482 aa21.08■□□□□ 0.97
USP4-208ENST00000464168 CCZ1P86791 482 aaPredicted RBP21.08■□□□□ 0.97
USP4-208ENST00000464168 TERF2Q15554 542 aa21.08■□□□□ 0.97
USP4-208ENST00000464168 TMPRSS11BQ86T26 416 aa21.08■□□□□ 0.97
USP4-208ENST00000464168 SCUBE1Q8IWY4 988 aa21.08■□□□□ 0.97
USP4-208ENST00000464168 OR52N2Q8NGI0 321 aa21.08■□□□□ 0.97
USP4-208ENST00000464168 LILRB4Q8NHJ6 448 aa21.08■□□□□ 0.97
USP4-208ENST00000464168 PPANQ9NQ55 473 aaKnown RBP21.08■□□□□ 0.97
USP4-208ENST00000464168 CORO1CQ9ULV4 474 aaPredicted RBP21.08■□□□□ 0.97
USP4-208ENST00000464168 CLDN16Q9Y5I7 305 aa21.08■□□□□ 0.97
USP4-208ENST00000464168 KCNE2Q9Y6J6 123 aa21.08■□□□□ 0.97
USP4-208ENST00000464168 ITPR3Q14573 2671 aa21.08■□□□□ 0.96
USP4-208ENST00000464168 INTS1Q8N201 2190 aaKnown RBP21.07■□□□□ 0.96
USP4-208ENST00000464168 TGFBR3LH3BV60 316 aa21.07■□□□□ 0.96
USP4-208ENST00000464168 DNALI1O14645 258 aaPredicted RBP21.07■□□□□ 0.96
USP4-208ENST00000464168 FANCGO15287 622 aa21.07■□□□□ 0.96
USP4-208ENST00000464168 PDE9AO76083 593 aa21.07■□□□□ 0.96
USP4-208ENST00000464168 PPP2R1BP30154 601 aa21.07■□□□□ 0.96
USP4-208ENST00000464168 NR0B1P51843 470 aaKnown RBP21.07■□□□□ 0.96
USP4-208ENST00000464168 RUNX2Q13950 521 aa21.07■□□□□ 0.96
USP4-208ENST00000464168 PPP1R7Q15435 360 aa21.07■□□□□ 0.96
USP4-208ENST00000464168 BBS9Q3SYG4 887 aa21.07■□□□□ 0.96
USP4-208ENST00000464168 TMEM211Q6ICI0 200 aa21.07■□□□□ 0.96
USP4-208ENST00000464168 FAM45BPQ6NSW5 357 aa21.07■□□□□ 0.96
USP4-208ENST00000464168 FAM45AQ8TCE6 357 aa21.07■□□□□ 0.96
USP4-208ENST00000464168 NPDC1Q9NQX5 325 aaPredicted RBP21.07■□□□□ 0.96
USP4-208ENST00000464168 PNO1Q9NRX1 252 aaKnown RBP21.07■□□□□ 0.96
USP4-208ENST00000464168 ZNF407Q9C0G0 2248 aa21.06■□□□□ 0.96
USP4-208ENST00000464168 CDC7O00311 574 aa21.06■□□□□ 0.96
USP4-208ENST00000464168 TFF3Q07654 80 aa21.06■□□□□ 0.96
USP4-208ENST00000464168 EMC4Q5J8M3 183 aa21.06■□□□□ 0.96
USP4-208ENST00000464168 ARHGAP11AQ6P4F7 1023 aa21.06■□□□□ 0.96
USP4-208ENST00000464168 TRMT10BQ6PF06 316 aaKnown RBP21.06■□□□□ 0.96
USP4-208ENST00000464168 C16orf47Q6ZP98 133 aaPredicted RBP21.06■□□□□ 0.96
USP4-208ENST00000464168 ACTRT1Q8TDG2 376 aa21.06■□□□□ 0.96
USP4-208ENST00000464168 ASB5Q8WWX0 329 aa21.06■□□□□ 0.96
USP4-208ENST00000464168 NCLNQ969V3 563 aa21.06■□□□□ 0.96
USP4-208ENST00000464168 VMP1Q96GC9 406 aa21.06■□□□□ 0.96
USP4-208ENST00000464168 UCK2Q9BZX2 261 aa21.06■□□□□ 0.96
USP4-208ENST00000464168 DEPPQ9NTK1 212 aa21.06■□□□□ 0.96
USP4-208ENST00000464168 KCMF1Q9P0J7 381 aa21.06■□□□□ 0.96
USP4-208ENST00000464168 RNF6Q9Y252 685 aa21.06■□□□□ 0.96
USP4-208ENST00000464168 A0A0G2JN53 185 aa21.05■□□□□ 0.96
USP4-208ENST00000464168 TMEM200CA6NKL6 621 aa21.05■□□□□ 0.96
USP4-208ENST00000464168 PRKNO60260 465 aaPredicted RBP21.05■□□□□ 0.96
USP4-208ENST00000464168 TOXO94900 526 aa21.05■□□□□ 0.96
USP4-208ENST00000464168 CHRNB4P30926 498 aa21.05■□□□□ 0.96
USP4-208ENST00000464168 SSR4P51571 173 aa21.05■□□□□ 0.96
USP4-208ENST00000464168 HNRNPFP52597 415 aaKnown RBP21.05■□□□□ 0.96
USP4-208ENST00000464168 STXBP1P61764 594 aaKnown RBP21.05■□□□□ 0.96
USP4-208ENST00000464168 HP1BP3Q5SSJ5 553 aaPredicted RBP21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms