RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 OTOGQ6ZRI0 2925 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 CNTRLQ7Z7A1 2325 aa12.42□□□□□ -0.42
HMGB3-204ENST00000448905 TRBV11-1A0A0K0K1C0 115 aa12.41□□□□□ -0.42
HMGB3-204ENST00000448905 HS6ST1O60243 411 aa12.41□□□□□ -0.42
HMGB3-204ENST00000448905 ITGA10O75578 1167 aa12.41□□□□□ -0.42
HMGB3-204ENST00000448905 PDE9AO76083 593 aa12.41□□□□□ -0.42
HMGB3-204ENST00000448905 MYO1DO94832 1006 aa12.41□□□□□ -0.42
HMGB3-204ENST00000448905 B3GALT4O96024 378 aa12.41□□□□□ -0.42
HMGB3-204ENST00000448905 TUBB4AP04350 444 aa12.41□□□□□ -0.42
HMGB3-204ENST00000448905 SMIM10L1P0DMW3 83 aa12.41□□□□□ -0.42
HMGB3-204ENST00000448905 GNAZP19086 355 aa12.41□□□□□ -0.42
HMGB3-204ENST00000448905 TFEBP19484 476 aa12.41□□□□□ -0.42
HMGB3-204ENST00000448905 SAT1P21673 171 aa12.41□□□□□ -0.42
HMGB3-204ENST00000448905 SSR4P51571 173 aa12.41□□□□□ -0.42
HMGB3-204ENST00000448905 HSD17B7P56937 341 aa12.41□□□□□ -0.42
HMGB3-204ENST00000448905 SLC13A2Q13183 592 aa12.41□□□□□ -0.42
HMGB3-204ENST00000448905 BMPR2Q13873 1038 aa12.41□□□□□ -0.42
HMGB3-204ENST00000448905 RBM20Q5T481 1227 aaKnown RBP12.41□□□□□ -0.42
HMGB3-204ENST00000448905 RNASEH2BQ5TBB1 312 aaKnown RBP12.41□□□□□ -0.42
HMGB3-204ENST00000448905 SPNS3Q6ZMD2 512 aa12.41□□□□□ -0.42
HMGB3-204ENST00000448905 LRRC8AQ8IWT6 810 aa12.41□□□□□ -0.42
HMGB3-204ENST00000448905 CNTN4Q8IWV2 1026 aa12.41□□□□□ -0.42
HMGB3-204ENST00000448905 PDIK1LQ8N165 341 aa12.41□□□□□ -0.42
HMGB3-204ENST00000448905 AGGF1Q8N302 714 aaeCLIP12.41□□□□□ -0.42
HMGB3-204ENST00000448905 TMEM132CQ8N3T6 1108 aa12.41□□□□□ -0.42
HMGB3-204ENST00000448905 ZFP62Q8NB50 900 aaPredicted RBP12.41□□□□□ -0.42
HMGB3-204ENST00000448905 C7orf57Q8NEG2 295 aa12.41□□□□□ -0.42
HMGB3-204ENST00000448905 CERS2Q96G23 380 aa12.41□□□□□ -0.42
HMGB3-204ENST00000448905 VMP1Q96GC9 406 aa12.41□□□□□ -0.42
HMGB3-204ENST00000448905 SMIM10Q96HG1 83 aa12.41□□□□□ -0.42
HMGB3-204ENST00000448905 SEC16BQ96JE7 1060 aa12.41□□□□□ -0.42
HMGB3-204ENST00000448905 EGFL8Q99944 293 aa12.41□□□□□ -0.42
HMGB3-204ENST00000448905 NECTIN3Q9NQS3 549 aa12.41□□□□□ -0.42
HMGB3-204ENST00000448905 ASIC3Q9UHC3 531 aa12.41□□□□□ -0.42
HMGB3-204ENST00000448905 SLC22A14Q9Y267 594 aa12.41□□□□□ -0.42
HMGB3-204ENST00000448905 IGKV3D-11A0A0A0MRZ8 115 aa12.4□□□□□ -0.42
HMGB3-204ENST00000448905 A8MVJ9 347 aa12.4□□□□□ -0.42
HMGB3-204ENST00000448905 ACOT7O00154 380 aa12.4□□□□□ -0.42
HMGB3-204ENST00000448905 ZNHIT1O43257 154 aa12.4□□□□□ -0.42
HMGB3-204ENST00000448905 C1GALT1C1LP0DN25 315 aa12.4□□□□□ -0.42
HMGB3-204ENST00000448905 GSTM2P28161 218 aa12.4□□□□□ -0.42
HMGB3-204ENST00000448905 REEP5Q00765 189 aa12.4□□□□□ -0.42
HMGB3-204ENST00000448905 PLGLB1Q02325 96 aa12.4□□□□□ -0.42
HMGB3-204ENST00000448905 HYAL2Q12891 473 aa12.4□□□□□ -0.42
HMGB3-204ENST00000448905 ILF2Q12905 390 aaKnown RBP12.4□□□□□ -0.42
HMGB3-204ENST00000448905 TOR1AIP1Q5JTV8 583 aa12.4□□□□□ -0.42
HMGB3-204ENST00000448905 TEDDM1Q5T9Z0 273 aa12.4□□□□□ -0.42
HMGB3-204ENST00000448905 CES4AQ5XG92 561 aa12.4□□□□□ -0.42
HMGB3-204ENST00000448905 NCCRP1Q6ZVX7 275 aaPredicted RBP12.4□□□□□ -0.42
HMGB3-204ENST00000448905 FGD2Q7Z6J4 655 aa12.4□□□□□ -0.42
HMGB3-204ENST00000448905 TMPRSS11BQ86T26 416 aa12.4□□□□□ -0.42
HMGB3-204ENST00000448905 CD163Q86VB7 1156 aa12.4□□□□□ -0.42
HMGB3-204ENST00000448905 ZNF227Q86WZ6 799 aa12.4□□□□□ -0.42
HMGB3-204ENST00000448905 CHERPQ8IWX8 916 aaKnown RBP12.4□□□□□ -0.42
HMGB3-204ENST00000448905 ZNF595Q8IYB9 648 aa12.4□□□□□ -0.42
HMGB3-204ENST00000448905 KRT78Q8N1N4 520 aa12.4□□□□□ -0.42
HMGB3-204ENST00000448905 CA13Q8N1Q1 262 aa12.4□□□□□ -0.42
HMGB3-204ENST00000448905 ANKRD53Q8N9V6 530 aa12.4□□□□□ -0.42
HMGB3-204ENST00000448905 APCDD1LQ8NCL9 501 aa12.4□□□□□ -0.42
HMGB3-204ENST00000448905 ACTRT1Q8TDG2 376 aa12.4□□□□□ -0.42
HMGB3-204ENST00000448905 VPS39Q96JC1 886 aa12.4□□□□□ -0.42
HMGB3-204ENST00000448905 KLHL31Q9H511 634 aa12.4□□□□□ -0.42
HMGB3-204ENST00000448905 PRTFDC1Q9NRG1 225 aa12.4□□□□□ -0.42
HMGB3-204ENST00000448905 HPF1Q9NWY4 346 aa12.4□□□□□ -0.42
HMGB3-204ENST00000448905 PPP2R2CQ9Y2T4 447 aa12.4□□□□□ -0.42
HMGB3-204ENST00000448905 CLCA3PQ9Y6N3 262 aa12.4□□□□□ -0.42
HMGB3-204ENST00000448905 ANKDD1BA6NHY2 528 aa12.39□□□□□ -0.43
HMGB3-204ENST00000448905 B3GALT2O43825 422 aa12.39□□□□□ -0.43
HMGB3-204ENST00000448905 IFNA16P05015 189 aa12.39□□□□□ -0.43
HMGB3-204ENST00000448905 CD1EP15812 388 aa12.39□□□□□ -0.43
HMGB3-204ENST00000448905 RFC3P40938 356 aa12.39□□□□□ -0.43
HMGB3-204ENST00000448905 PPIAP62937 165 aaKnown RBP12.39□□□□□ -0.43
HMGB3-204ENST00000448905 CDKL1Q00532 357 aa12.39□□□□□ -0.43
HMGB3-204ENST00000448905 TGM3Q08188 693 aa12.39□□□□□ -0.43
HMGB3-204ENST00000448905 PMPCAQ10713 525 aa12.39□□□□□ -0.43
HMGB3-204ENST00000448905 EFTUD2Q15029 972 aaKnown RBP eCLIP12.39□□□□□ -0.431e-8■■■■■ 59.6
HMGB3-204ENST00000448905 CMPK2Q5EBM0 449 aa12.39□□□□□ -0.43
HMGB3-204ENST00000448905 TMIGD1Q6UXZ0 262 aa12.39□□□□□ -0.43
HMGB3-204ENST00000448905 FRA10AC1Q70Z53 315 aa12.39□□□□□ -0.43
HMGB3-204ENST00000448905 MDGA2Q7Z553 956 aa12.39□□□□□ -0.43
HMGB3-204ENST00000448905 CLYBLQ8N0X4 340 aa12.39□□□□□ -0.43
HMGB3-204ENST00000448905 MYRIPQ8NFW9 859 aa12.39□□□□□ -0.43
HMGB3-204ENST00000448905 CREB3L4Q8TEY5 395 aa12.39□□□□□ -0.43
HMGB3-204ENST00000448905 ASB15Q8WXK1 588 aa12.39□□□□□ -0.43
HMGB3-204ENST00000448905 CCT6BQ92526 530 aa12.39□□□□□ -0.43
HMGB3-204ENST00000448905 DAZLQ92904 295 aaKnown RBP12.39□□□□□ -0.43
HMGB3-204ENST00000448905 GAL3ST3Q96A11 431 aa12.39□□□□□ -0.43
HMGB3-204ENST00000448905 LRRC39Q96DD0 335 aa12.39□□□□□ -0.43
HMGB3-204ENST00000448905 PDLIM2Q96JY6 352 aa12.39□□□□□ -0.43
HMGB3-204ENST00000448905 PITHD1Q9GZP4 211 aaPredicted RBP12.39□□□□□ -0.43
HMGB3-204ENST00000448905 DEFB127Q9H1M4 99 aa12.39□□□□□ -0.43
HMGB3-204ENST00000448905 IGSF5Q9NSI5 407 aa12.39□□□□□ -0.43
HMGB3-204ENST00000448905 KCMF1Q9P0J7 381 aa12.39□□□□□ -0.43
HMGB3-204ENST00000448905 PPIEQ9UNP9 301 aaKnown RBP12.39□□□□□ -0.43
HMGB3-204ENST00000448905 CSMD2Q7Z408 3487 aa12.39□□□□□ -0.43
HMGB3-204ENST00000448905 DNALI1O14645 258 aaPredicted RBP12.38□□□□□ -0.43
HMGB3-204ENST00000448905 KRT38O76015 456 aa12.38□□□□□ -0.43
HMGB3-204ENST00000448905 TNNI3P19429 210 aa12.38□□□□□ -0.43
HMGB3-204ENST00000448905 SLC12A2P55011 1212 aa12.38□□□□□ -0.43
HMGB3-204ENST00000448905 KRTAP10-9P60411 292 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms