RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 TRMT61BQ9BVS5 477 aaKnown RBP12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 AMBNQ9NP70 447 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 MYO5BQ9ULV0 1848 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 CCDC85CA6NKD9 419 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 NPIPA2E9PIF3 369 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 NPIPA3F8WFD2 350 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 IGKV5-2P06315 115 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 C6P13671 934 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 OXTRP30559 389 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 SOX10P56693 466 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 ERVK-8P63133 956 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 CAMK2DQ13557 499 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 ATG9BQ674R7 924 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 TMPPEQ6ZT21 453 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 RSC1A1Q92681 617 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 RELTQ969Z4 430 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 MTMR9Q96QG7 549 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 RAI2Q9Y5P3 530 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 CEP170Q5SW79 1584 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 CEMIPQ8WUJ3 1361 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 FOXO4P98177 505 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 C7orf57Q8NEG2 295 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 KCNJ9Q92806 393 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 SAGE1Q9NXZ1 904 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 ACTR3BQ9P1U1 418 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 TLX2O43763 284 aaPredicted RBP12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 ABCB7O75027 752 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 CLDN11O75508 207 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 SPDEFO95238 335 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 RPL13AP3Q6NVV1 102 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 PLEKHG7Q6ZR37 379 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 NUDT13Q86X67 352 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 FNIP2Q9P278 1114 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 hCG_1807616A0A1W2PRN6 198 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 BEST1O76090 585 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 PIM1P11309 404 aaPredicted RBP12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 TPT1P13693 172 aaKnown RBP12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 HERVK_113P63132 956 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 QPCTQ16769 361 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 TMEM164Q5U3C3 297 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 TANGO2Q6ICL3 276 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 CFAP77Q6ZQR2 320 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 COQ10AQ96MF6 247 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 ERVK-6Q9BXR3 956 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 MROQ9BYG7 248 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 RP1L1Q8IWN7 2480 aaPredicted RBP12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 TRAPPC13A5PLN9 417 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 MAP2K3P46734 347 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 ST3GAL3Q11203 375 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 PPA1Q15181 289 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 DCLRE1AQ6PJP8 1040 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 DPPA2Q7Z7J5 298 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 CYP2S1Q96SQ9 504 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 SLC6A16Q9GZN6 736 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 GLI2P10070 1586 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 J3QRK9 145 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 SYNGR4O95473 234 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 BPIP17213 487 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 ERVK-21P61565 698 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 SLC22A18Q96BI1 424 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 FBXL8Q96CD0 374 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 SYT3Q9BQG1 590 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 PRDM12Q9H4Q4 367 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 GRIN3BO60391 1043 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 ZNF442Q9H7R0 627 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 WDR6Q9NNW5 1121 aaKnown RBP12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 SPEF2Q9C093 1822 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 ZC3H13Q5T200 1668 aaKnown RBP12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 PRKCGP05129 697 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 PRPS1L1P21108 318 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 ZNF425Q6IV72 752 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 PSD4Q8NDX1 1056 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 OR6N1Q8NGY5 312 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 TRMT10AQ8TBZ6 339 aaKnown RBP12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 DCUN1D4Q92564 292 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 CRAMP1Q96RY5 1269 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 PAK1IP1Q9NWT1 392 aaPredicted RBP12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 ERVK13-1Q9NX77 482 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 HTR7P34969 479 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 SOX9P48436 509 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 MYLK3Q32MK0 819 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 FAM182BQ5T319 152 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 ANKS1BQ7Z6G8 1248 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 OR51E2Q9H255 320 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 POU2F3Q9UKI9 436 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 C1RP00736 705 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 DCNP07585 359 aaKnown RBP12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 KLF1Q13351 362 aaPredicted RBP12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 MAP3K4Q9Y6R4 1608 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 ALOX15BO15296 676 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 CH25HO95992 272 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 EFNA1P20827 205 aaPredicted RBP12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 NSG1P42857 185 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 CAV2P51636 162 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 MON1BQ7L1V2 547 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 SLC15A3Q8IY34 581 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 DCBLD1Q8N8Z6 715 aa12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 TP63Q9H3D4 680 aaPredicted RBP12.91□□□□□ -0.34
CCDC88A-204ENST00000413716 NMUR1Q9HB89 426 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms