RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 LEXMQ3ZCV2 418 aa12.47□□□□□ -0.41
PTPRN-202ENST00000409251 C5orf22Q49AR2 442 aa12.47□□□□□ -0.41
PTPRN-202ENST00000409251 FAM205BPQ63HN1 556 aa12.47□□□□□ -0.41
PTPRN-202ENST00000409251 TMIGD1Q6UXZ0 262 aa12.47□□□□□ -0.41
PTPRN-202ENST00000409251 RFLNAQ6ZTI6 216 aa12.47□□□□□ -0.41
PTPRN-202ENST00000409251 SYT12Q8IV01 421 aa12.47□□□□□ -0.41
PTPRN-202ENST00000409251 ATP6V1C2Q8NEY4 427 aa12.47□□□□□ -0.41
PTPRN-202ENST00000409251 OR5AK3PQ8NH89 298 aa12.47□□□□□ -0.41
PTPRN-202ENST00000409251 CYB5D2Q8WUJ1 264 aa12.47□□□□□ -0.41
PTPRN-202ENST00000409251 TP53INP1Q96A56 240 aa12.47□□□□□ -0.41
PTPRN-202ENST00000409251 TMEM175Q9BSA9 504 aa12.47□□□□□ -0.41
PTPRN-202ENST00000409251 BTBD2Q9BX70 525 aa12.47□□□□□ -0.41
PTPRN-202ENST00000409251 SAMD4AQ9UPU9 718 aaKnown RBP12.47□□□□□ -0.41
PTPRN-202ENST00000409251 WNT6Q9Y6F9 365 aa12.47□□□□□ -0.41
PTPRN-202ENST00000409251 C2orf81A6NN90 581 aa12.47□□□□□ -0.41
PTPRN-202ENST00000409251 J3KTA2 159 aa12.47□□□□□ -0.41
PTPRN-202ENST00000409251 IFRD1O00458 451 aaPredicted RBP12.47□□□□□ -0.41
PTPRN-202ENST00000409251 SCO2O43819 266 aa12.47□□□□□ -0.41
PTPRN-202ENST00000409251 ARHGEF15O94989 841 aa12.47□□□□□ -0.41
PTPRN-202ENST00000409251 EPCAMP16422 314 aa12.47□□□□□ -0.41
PTPRN-202ENST00000409251 CHMP1BQ7LBR1 199 aa12.47□□□□□ -0.41
PTPRN-202ENST00000409251 GRAMD2AQ8IUY3 354 aa12.47□□□□□ -0.41
PTPRN-202ENST00000409251 CELF5Q8N6W0 485 aaKnown RBP12.47□□□□□ -0.41
PTPRN-202ENST00000409251 B3GNT7Q8NFL0 401 aa12.47□□□□□ -0.41
PTPRN-202ENST00000409251 HCAR2Q8TDS4 363 aa12.47□□□□□ -0.41
PTPRN-202ENST00000409251 SLC7A6Q92536 515 aa12.47□□□□□ -0.41
PTPRN-202ENST00000409251 DPF3Q92784 378 aa12.47□□□□□ -0.41
PTPRN-202ENST00000409251 PPP3R2Q96LZ3 170 aa12.47□□□□□ -0.41
PTPRN-202ENST00000409251 SLC52A3Q9NQ40 469 aa12.47□□□□□ -0.41
PTPRN-202ENST00000409251 CLEC2DQ9UHP7 191 aa12.47□□□□□ -0.41
PTPRN-202ENST00000409251 CFL2Q9Y281 166 aa12.47□□□□□ -0.41
PTPRN-202ENST00000409251 A0A0G2JMP0 313 aa12.46□□□□□ -0.41
PTPRN-202ENST00000409251 A0A1B0GVM2 712 aa12.46□□□□□ -0.41
PTPRN-202ENST00000409251 A0A1W2PQL4 384 aaPredicted RBP12.46□□□□□ -0.41
PTPRN-202ENST00000409251 PLD2O14939 933 aa12.46□□□□□ -0.41
PTPRN-202ENST00000409251 FGBP02675 491 aa12.46□□□□□ -0.41
PTPRN-202ENST00000409251 ATXN1LP0C7T5 689 aaKnown RBP12.46□□□□□ -0.41
PTPRN-202ENST00000409251 BCKDHAP12694 445 aa12.46□□□□□ -0.41
PTPRN-202ENST00000409251 POU3F3P20264 500 aaPredicted RBP12.46□□□□□ -0.41
PTPRN-202ENST00000409251 FPR1P21462 350 aa12.46□□□□□ -0.41
PTPRN-202ENST00000409251 ZFP36L2P47974 494 aaKnown RBP12.46□□□□□ -0.41
PTPRN-202ENST00000409251 HSPA14Q0VDF9 509 aa12.46□□□□□ -0.41
PTPRN-202ENST00000409251 TEAD2Q15562 447 aa12.46□□□□□ -0.41
PTPRN-202ENST00000409251 PARP15Q460N3 678 aa12.46□□□□□ -0.41
PTPRN-202ENST00000409251 GRASPQ7Z6J2 395 aaPredicted RBP12.46□□□□□ -0.41
PTPRN-202ENST00000409251 TMEM25Q86YD3 366 aa12.46□□□□□ -0.41
PTPRN-202ENST00000409251 CRIPAKQ8N1N5 446 aa12.46□□□□□ -0.41
PTPRN-202ENST00000409251 RDH12Q96NR8 316 aa12.46□□□□□ -0.41
PTPRN-202ENST00000409251 SLC46A2Q9BY10 475 aa12.46□□□□□ -0.41
PTPRN-202ENST00000409251 SLC22A4Q9H015 551 aa12.46□□□□□ -0.41
PTPRN-202ENST00000409251 GALNT9Q9HCQ5 603 aa12.46□□□□□ -0.41
PTPRN-202ENST00000409251 YARS2Q9Y2Z4 477 aaKnown RBP12.46□□□□□ -0.41
PTPRN-202ENST00000409251 GREB1Q4ZG55 1949 aa12.46□□□□□ -0.42
PTPRN-202ENST00000409251 OTCP00480 354 aa12.46□□□□□ -0.42
PTPRN-202ENST00000409251 CXCL10P02778 98 aa12.46□□□□□ -0.42
PTPRN-202ENST00000409251 ZNF250P15622 560 aa12.46□□□□□ -0.42
PTPRN-202ENST00000409251 APEX1P27695 318 aaKnown RBP12.46□□□□□ -0.42
PTPRN-202ENST00000409251 PRIM2P49643 509 aa12.46□□□□□ -0.42
PTPRN-202ENST00000409251 CDH4P55283 916 aa12.46□□□□□ -0.42
PTPRN-202ENST00000409251 RPS14P62263 151 aaKnown RBP12.46□□□□□ -0.42
PTPRN-202ENST00000409251 ZC3H12BQ5HYM0 836 aaKnown RBP12.46□□□□□ -0.42
PTPRN-202ENST00000409251 PAQR6Q6TCH4 344 aa12.46□□□□□ -0.42
PTPRN-202ENST00000409251 SHFQ7M4L6 423 aa12.46□□□□□ -0.42
PTPRN-202ENST00000409251 MSRB3Q8IXL7 192 aa12.46□□□□□ -0.42
PTPRN-202ENST00000409251 LGI4Q8N135 537 aa12.46□□□□□ -0.42
PTPRN-202ENST00000409251 OR10G2Q8NGC3 310 aa12.46□□□□□ -0.42
PTPRN-202ENST00000409251 OR2A14Q96R47 310 aa12.46□□□□□ -0.42
PTPRN-202ENST00000409251 ZDHHC6Q9H6R6 413 aa12.46□□□□□ -0.42
PTPRN-202ENST00000409251 SLAMF7Q9NQ25 335 aa12.46□□□□□ -0.42
PTPRN-202ENST00000409251 E2F3O00716 465 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 RGS13O14921 159 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 FFAR2O15552 330 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 CLDN11O75508 207 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 OR7A10O76100 309 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 TIMP1P01033 207 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 TNNI3P19429 210 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 HOXC13P31276 330 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 EVI2BP34910 448 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 TIE1P35590 1138 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 MAN2A2P49641 1150 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 LRRC32Q14392 662 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 TCEA2Q15560 299 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 TSPYL5Q86VY4 417 aaPredicted RBP12.45□□□□□ -0.42
PTPRN-202ENST00000409251 ARL15Q9NXU5 204 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 FADS2P1A8MWK0 482 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 ISM1B1AKI9 464 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 ARHGAP33O14559 1287 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 SUV39H1O43463 412 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 DDCP20711 480 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 CLCN7P51798 805 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 BCL2L1Q07817 233 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 DBPQ10586 325 aaPredicted RBP12.45□□□□□ -0.42
PTPRN-202ENST00000409251 PROX2Q3B8N5 592 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 CXorf57Q6NSI4 855 aaKnown RBP12.45□□□□□ -0.42
PTPRN-202ENST00000409251 MTFR2Q6P444 385 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 SHQ1Q6PI26 577 aaKnown RBP12.45□□□□□ -0.42
PTPRN-202ENST00000409251 LACC1Q8IV20 430 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 NKAPQ8N5F7 415 aaKnown RBP12.45□□□□□ -0.42
PTPRN-202ENST00000409251 SYT14Q8NB59 555 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 SLC37A3Q8NCC5 494 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms