RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 FXYD1O00168 92 aa25.51■■□□□ 1.67
MSX1-201ENST00000382723 HIST1H1TP22492 207 aaPredicted RBP25.51■■□□□ 1.67
MSX1-201ENST00000382723 SNRPNP63162 240 aaKnown RBP25.51■■□□□ 1.67
MSX1-201ENST00000382723 TGM3Q08188 693 aa25.51■■□□□ 1.67
MSX1-201ENST00000382723 SNAP47Q5SQN1 464 aa25.51■■□□□ 1.67
MSX1-201ENST00000382723 C8orf82Q6P1X6 216 aaPredicted RBP25.51■■□□□ 1.67
MSX1-201ENST00000382723 RNF148Q8N7C7 305 aa25.51■■□□□ 1.67
MSX1-201ENST00000382723 FAM181AQ8N9Y4 354 aa25.51■■□□□ 1.67
MSX1-201ENST00000382723 UTP15Q8TED0 518 aaKnown RBP25.51■■□□□ 1.67
MSX1-201ENST00000382723 GTF2H4Q92759 462 aa25.51■■□□□ 1.67
MSX1-201ENST00000382723 GAL3ST3Q96A11 431 aa25.51■■□□□ 1.67
MSX1-201ENST00000382723 TM4SF18Q96CE8 201 aa25.51■■□□□ 1.67
MSX1-201ENST00000382723 PRPF18Q99633 342 aaKnown RBP25.51■■□□□ 1.67
MSX1-201ENST00000382723 TMEM9Q9P0T7 183 aa25.51■■□□□ 1.67
MSX1-201ENST00000382723 PRPF19Q9UMS4 504 aaKnown RBP25.51■■□□□ 1.67
MSX1-201ENST00000382723 MAPRE3Q9UPY8 281 aa25.51■■□□□ 1.67
MSX1-201ENST00000382723 ATP5A1P25705 553 aaKnown RBP25.5■■□□□ 1.67
MSX1-201ENST00000382723 CERS1P27544 350 aa25.5■■□□□ 1.67
MSX1-201ENST00000382723 CSF2RBP32927 897 aa25.5■■□□□ 1.67
MSX1-201ENST00000382723 MLLT3P42568 568 aaPredicted RBP25.5■■□□□ 1.67
MSX1-201ENST00000382723 BTN3A2P78410 334 aa25.5■■□□□ 1.67
MSX1-201ENST00000382723 ELF3P78545 371 aaPredicted RBP25.5■■□□□ 1.67
MSX1-201ENST00000382723 PERM1Q5SV97 790 aa25.5■■□□□ 1.67
MSX1-201ENST00000382723 PRR23CQ6ZRP0 262 aa25.5■■□□□ 1.67
MSX1-201ENST00000382723 PLXDC1Q8IUK5 500 aa25.5■■□□□ 1.67
MSX1-201ENST00000382723 MCATQ8IVS2 390 aaKnown RBP25.5■■□□□ 1.67
MSX1-201ENST00000382723 CSNK1A1LQ8N752 337 aa25.5■■□□□ 1.67
MSX1-201ENST00000382723 ACOT4Q8N9L9 421 aa25.5■■□□□ 1.67
MSX1-201ENST00000382723 OR6C4Q8NGE1 309 aa25.5■■□□□ 1.67
MSX1-201ENST00000382723 DNAJB14Q8TBM8 379 aa25.5■■□□□ 1.67
MSX1-201ENST00000382723 HOPXQ9BPY8 73 aaPredicted RBP25.5■■□□□ 1.67
MSX1-201ENST00000382723 GPATCH1Q9BRR8 931 aaKnown RBP25.5■■□□□ 1.67
MSX1-201ENST00000382723 DUSP26Q9BV47 211 aa25.5■■□□□ 1.67
MSX1-201ENST00000382723 TRIM8Q9BZR9 551 aa25.5■■□□□ 1.67
MSX1-201ENST00000382723 SPAG4Q9NPE6 437 aa25.5■■□□□ 1.67
MSX1-201ENST00000382723 FRYLO94915 3013 aa25.5■■□□□ 1.67
MSX1-201ENST00000382723 PCDHGA12O60330 932 aa25.49■■□□□ 1.67
MSX1-201ENST00000382723 CTSBP07858 339 aa25.49■■□□□ 1.67
MSX1-201ENST00000382723 FURINP09958 794 aa25.49■■□□□ 1.67
MSX1-201ENST00000382723 SLAMF1Q13291 335 aa25.49■■□□□ 1.67
MSX1-201ENST00000382723 ZC3H12BQ5HYM0 836 aaKnown RBP25.49■■□□□ 1.67
MSX1-201ENST00000382723 DNAJC14Q6Y2X3 702 aaPredicted RBP25.49■■□□□ 1.67
MSX1-201ENST00000382723 IKBIPQ70UQ0 350 aa25.49■■□□□ 1.67
MSX1-201ENST00000382723 HPS6Q86YV9 775 aa25.49■■□□□ 1.67
MSX1-201ENST00000382723 ZNF655Q8N720 491 aaPredicted RBP25.49■■□□□ 1.67
MSX1-201ENST00000382723 CCDC124Q96CT7 223 aaKnown RBP25.49■■□□□ 1.67
MSX1-201ENST00000382723 CD180Q99467 661 aa25.49■■□□□ 1.67
MSX1-201ENST00000382723 RMND5AQ9H871 391 aa25.49■■□□□ 1.67
MSX1-201ENST00000382723 COPS7BQ9H9Q2 264 aaPredicted RBP25.49■■□□□ 1.67
MSX1-201ENST00000382723 SLC7A8Q9UHI5 535 aa25.49■■□□□ 1.67
MSX1-201ENST00000382723 KCNH1O95259 989 aa25.49■■□□□ 1.67
MSX1-201ENST00000382723 C9P02748 559 aa25.49■■□□□ 1.67
MSX1-201ENST00000382723 EFNA1P20827 205 aaPredicted RBP25.49■■□□□ 1.67
MSX1-201ENST00000382723 SLC7A2P52569 658 aa25.49■■□□□ 1.67
MSX1-201ENST00000382723 DLEU7Q6UYE1 221 aa25.49■■□□□ 1.67
MSX1-201ENST00000382723 FBXW8Q8N3Y1 598 aa25.49■■□□□ 1.67
MSX1-201ENST00000382723 DNAJC22Q8N4W6 341 aa25.49■■□□□ 1.67
MSX1-201ENST00000382723 OR8J2Q8NGG1 315 aa25.49■■□□□ 1.67
MSX1-201ENST00000382723 MIEF1Q9NQG6 463 aa25.49■■□□□ 1.67
MSX1-201ENST00000382723 TEX10Q9NXF1 929 aaPredicted RBP25.49■■□□□ 1.67
MSX1-201ENST00000382723 ATP6V1HQ9UI12 483 aa25.49■■□□□ 1.67
MSX1-201ENST00000382723 MDC1Q14676 2089 aaKnown RBP25.48■■□□□ 1.67
MSX1-201ENST00000382723 URADA6NGE7 173 aa25.48■■□□□ 1.67
MSX1-201ENST00000382723 FAM58BPP0C7Q3 252 aa25.48■■□□□ 1.67
MSX1-201ENST00000382723 ALDH9A1P49189 494 aa25.48■■□□□ 1.67
MSX1-201ENST00000382723 KLC1Q07866 573 aa25.48■■□□□ 1.67
MSX1-201ENST00000382723 SLC9A5Q14940 896 aa25.48■■□□□ 1.67
MSX1-201ENST00000382723 ZNF385BQ569K4 471 aa25.48■■□□□ 1.67
MSX1-201ENST00000382723 PGM2L1Q6PCE3 622 aa25.48■■□□□ 1.67
MSX1-201ENST00000382723 R3HCC1LQ7Z5L2 792 aaKnown RBP25.48■■□□□ 1.67
MSX1-201ENST00000382723 PPCDCQ96CD2 204 aa25.48■■□□□ 1.67
MSX1-201ENST00000382723 ITCHQ96J02 903 aa25.48■■□□□ 1.67
MSX1-201ENST00000382723 INPP5KQ9BT40 448 aa25.48■■□□□ 1.67
MSX1-201ENST00000382723 PNLIPP16233 465 aa25.47■■□□□ 1.67
MSX1-201ENST00000382723 SEPHS1P49903 392 aa25.47■■□□□ 1.67
MSX1-201ENST00000382723 ARFIP1P53367 373 aa25.47■■□□□ 1.67
MSX1-201ENST00000382723 NUBP1P53384 320 aa25.47■■□□□ 1.67
MSX1-201ENST00000382723 MTTPP55157 894 aa25.47■■□□□ 1.67
MSX1-201ENST00000382723 WNT3P56703 355 aa25.47■■□□□ 1.67
MSX1-201ENST00000382723 DEFB134Q4QY38 66 aa25.47■■□□□ 1.67
MSX1-201ENST00000382723 WASHC2DQ5SRD0 308 aa25.47■■□□□ 1.67
MSX1-201ENST00000382723 TICAM1Q8IUC6 712 aa25.47■■□□□ 1.67
MSX1-201ENST00000382723 COQ8BQ96D53 544 aa25.47■■□□□ 1.67
MSX1-201ENST00000382723 NUDT22Q9BRQ3 303 aa25.47■■□□□ 1.67
MSX1-201ENST00000382723 PDE7BQ9NP56 450 aa25.47■■□□□ 1.67
MSX1-201ENST00000382723 SERHLQ9NQF3 203 aa25.47■■□□□ 1.67
MSX1-201ENST00000382723 FBXW2Q9UKT8 454 aa25.47■■□□□ 1.67
MSX1-201ENST00000382723 MRPS2Q9Y399 296 aaKnown RBP25.47■■□□□ 1.67
MSX1-201ENST00000382723 GOLGA4Q13439 2230 aaKnown RBP25.47■■□□□ 1.67
MSX1-201ENST00000382723 ARID1BQ8NFD5 2236 aaPredicted RBP25.47■■□□□ 1.67
MSX1-201ENST00000382723 EME2A4GXA9 379 aaPredicted RBP25.47■■□□□ 1.67
MSX1-201ENST00000382723 ZSCAN9O15535 394 aaPredicted RBP25.47■■□□□ 1.67
MSX1-201ENST00000382723 ZBTB11O95625 1053 aaPredicted RBP25.47■■□□□ 1.67
MSX1-201ENST00000382723 RPL3P39023 403 aaKnown RBP25.47■■□□□ 1.67
MSX1-201ENST00000382723 CEACAM7Q14002 265 aa25.47■■□□□ 1.67
MSX1-201ENST00000382723 PIGGQ5H8A4 983 aa25.47■■□□□ 1.67
MSX1-201ENST00000382723 PLA2G2CQ5R387 149 aa25.47■■□□□ 1.67
MSX1-201ENST00000382723 PRMT9Q6P2P2 845 aa25.47■■□□□ 1.67
MSX1-201ENST00000382723 ABHD13Q7L211 337 aa25.47■■□□□ 1.67
MSX1-201ENST00000382723 CAMKMTQ7Z624 323 aa25.47■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms