RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 DGAT2Q96PD7 388 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 MEAF6Q9HAF1 191 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 TIGARQ9NQ88 270 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 HCN2Q9UL51 889 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 INSL5Q9Y5Q6 135 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 PSMD9O00233 223 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 GRID2O43424 1007 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 HPRP00739 348 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 ACRP10323 421 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 CELP19835 753 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 ELK4P28324 431 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 MAGEA2P43356 314 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 NRIP1P48552 1158 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 HLCSP50747 726 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 AP2S1P53680 142 aaPredicted RBP11.03□□□□□ -0.64
PTPRF-203ENST00000372407 DNASE1L3Q13609 305 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 LY6G5CQ5SRR4 150 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 NCEH1Q6PIU2 408 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 ZNF782Q6ZMW2 699 aaPredicted RBP11.03□□□□□ -0.64
PTPRF-203ENST00000372407 ZFAND4Q86XD8 727 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 GALNT12Q8IXK2 581 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 SPAG16Q8N0X2 631 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 PNLDC1Q8NA58 520 aaKnown RBP11.03□□□□□ -0.64
PTPRF-203ENST00000372407 ACOT12Q8WYK0 555 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 MCHR1Q99705 422 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 CARD8Q9Y2G2 431 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 SPEF1Q9Y4P9 236 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 HSPB11Q9Y547 144 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 MT-ND5P03915 603 aa11.02□□□□□ -0.64
PTPRF-203ENST00000372407 IFI30P13284 250 aa11.02□□□□□ -0.64
PTPRF-203ENST00000372407 HSD3B1P14060 373 aa11.02□□□□□ -0.64
PTPRF-203ENST00000372407 PGAM2P15259 253 aa11.02□□□□□ -0.64
PTPRF-203ENST00000372407 HSD3B2P26439 372 aa11.02□□□□□ -0.64
PTPRF-203ENST00000372407 OR1E2P47887 323 aa11.02□□□□□ -0.64
PTPRF-203ENST00000372407 CD47Q08722 323 aa11.02□□□□□ -0.64
PTPRF-203ENST00000372407 BLOC1S3Q6QNY0 202 aa11.02□□□□□ -0.64
PTPRF-203ENST00000372407 SLC36A4Q6YBV0 504 aa11.02□□□□□ -0.64
PTPRF-203ENST00000372407 ZNF783Q6ZMS7 281 aa11.02□□□□□ -0.64
PTPRF-203ENST00000372407 SNX29P2Q8IUI4 249 aa11.02□□□□□ -0.64
PTPRF-203ENST00000372407 MS4A4AQ96JQ5 239 aa11.02□□□□□ -0.64
PTPRF-203ENST00000372407 ZNF778Q96MU6 729 aa11.02□□□□□ -0.64
PTPRF-203ENST00000372407 SOX17Q9H6I2 414 aaPredicted RBP11.02□□□□□ -0.64
PTPRF-203ENST00000372407 FKBP14Q9NWM8 211 aa11.02□□□□□ -0.64
PTPRF-203ENST00000372407 TAS2R10Q9NYW0 307 aa11.02□□□□□ -0.64
PTPRF-203ENST00000372407 KCNK6Q9Y257 313 aa11.02□□□□□ -0.64
PTPRF-203ENST00000372407 WDR37Q9Y2I8 494 aa11.02□□□□□ -0.64
PTPRF-203ENST00000372407 ZNF726A6NNF4 738 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 MATN1P21941 496 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 GADD45AP24522 165 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 CBFBQ13951 182 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 TCEAL6Q6IPX3 200 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 ANKRD26P1Q6NSI1 321 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 CEP97Q8IW35 865 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 YIPF7Q8N8F6 280 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 BPIFB1Q8TDL5 484 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 OVCA2Q8WZ82 227 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 FAM129BQ96TA1 746 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 RHCGQ9UBD6 479 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 EXOSC1Q9Y3B2 195 aaKnown RBP11.02□□□□□ -0.65
PTPRF-203ENST00000372407 CDH10Q9Y6N8 788 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 NUMA1Q14980 2115 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 IRS2Q9Y4H2 1338 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 KANTRA0A1W2PQU2 76 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 ZNF670-ZNF695F2Z2N8 137 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 SNAI1O95863 264 aaPredicted RBP11.02□□□□□ -0.65
PTPRF-203ENST00000372407 CEBPGP53567 150 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 RPP38P78345 283 aaKnown RBP11.02□□□□□ -0.65
PTPRF-203ENST00000372407 THRSPQ92748 146 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 SCAMP4Q969E2 229 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 RELTQ969Z4 430 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 LGALS12Q96DT0 336 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 RANBP9Q96S59 729 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 DOHHQ9BU89 302 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 HERC2P3Q9BVR0 1158 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 TRPV4Q9HBA0 871 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 ENAMQ9NRM1 1142 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 FBXL12Q9NXK8 326 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 PCDHGA3Q9Y5H0 932 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 KNL1Q8NG31 2342 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 RP1L1Q8IWN7 2480 aaPredicted RBP11.02□□□□□ -0.65
PTPRF-203ENST00000372407 MAFKO60675 156 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 ZNF623O75123 536 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 KDM4BO94953 1096 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 EPCAMP16422 314 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 ATF4P18848 351 aaPredicted RBP11.02□□□□□ -0.65
PTPRF-203ENST00000372407 SLC6A6P31641 620 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 KLHL26Q53HC5 615 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 COQ5Q5HYK3 327 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 ZNF101Q8IZC7 436 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 JAGN1Q8N5M9 183 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 ZBTB8BQ8NAP8 495 aaPredicted RBP11.02□□□□□ -0.65
PTPRF-203ENST00000372407 AVL9Q8NBF6 648 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 ZNF675Q8TD23 568 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 SMPDL3BQ92485 455 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 JSRP1Q96MG2 331 aaPredicted RBP11.02□□□□□ -0.65
PTPRF-203ENST00000372407 SCGB3A2Q96PL1 93 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 TRIB3Q96RU7 358 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 C16orf70Q9BSU1 422 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 ZNF696Q9H7X3 374 aa11.02□□□□□ -0.65
PTPRF-203ENST00000372407 MS4A12Q9NXJ0 267 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms