RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 PON3Q15166 354 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 ADGRF1Q5T601 910 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 AGTRAPQ6RW13 159 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 STOML3Q8TAV4 291 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 CCDC120Q96HB5 630 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 CD180Q99467 661 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 METTL8Q9H825 291 aaKnown RBP18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 TRPM3Q9HCF6 1732 aaPredicted RBP18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 CARNS1A5YM72 827 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 MEN1O00255 615 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 RPS13P62277 151 aaKnown RBP18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 SH3BP2P78314 561 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 ZNF252P-AS1Q0IIN9 211 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 GK3PQ14409 553 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 EXOC3L2Q2M3D2 409 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 COQ5Q5HYK3 327 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 PRAMEF14Q5SWL7 426 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 PRAMEF13Q5VWM6 474 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 DESI1Q6ICB0 168 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 TAS1R3Q7RTX0 852 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 FAM124AQ86V42 546 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 DEDD2Q8WXF8 326 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 HYLS1Q96M11 299 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 FEVQ99581 238 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 GPR83Q9NYM4 423 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 CNTRLQ7Z7A1 2325 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 DOT1LQ8TEK3 1739 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 NUAK1O60285 661 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 LHFPL3Q86UP9 236 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 GALNT13Q8IUC8 556 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 OR8J1Q8NGP2 316 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 PMM1Q92871 262 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 DLGAP4Q9Y2H0 992 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 COLEC10Q9Y6Z7 277 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 KCNA5P22460 613 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 KCNQ1P51787 676 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 SLC36A3Q495N2 470 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 ZFAND4Q86XD8 727 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 TSGA13Q96PP4 275 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 RANBP9Q96S59 729 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 NEUROD4Q9HD90 331 aa18.86■□□□□ 0.61
CCDC88B-202ENST00000356786 DISC1C4P0D8 188 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 ATE1O95260 518 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 PPIGQ13427 754 aaKnown RBP eCLIP18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 TMEM17Q86X19 198 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 ZFP90Q8TF47 636 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 RGMAQ96B86 450 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 TSNAXQ99598 290 aaKnown RBP18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 SYT17Q9BSW7 474 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 S1PR4O95977 384 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 CBSLP0DN79 551 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 CBSP35520 551 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 MLLT10P55197 1068 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 NDNFQ8TB73 568 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 FIZ1Q96SL8 496 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 AIFM2Q9BRQ8 373 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 ARL6Q9H0F7 186 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 FOLH1BQ9HBA9 442 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 MYH2Q9UKX2 1941 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 BTBD19C9JJ37 291 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 GATBO75879 557 aaKnown RBP18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 CCR8P51685 355 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 FGFBP1Q14512 234 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 SEC23BQ15437 767 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 RAB6CQ53S08 254 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 ZNF767PQ75MW2 155 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 AMZ2Q86W34 360 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 OR2L2Q8NH16 312 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 SORT1Q99523 831 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 ZNF350Q9GZX5 532 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 RAB6CQ9H0N0 254 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 TMEM181Q9P2C4 612 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 UPK1BO75841 260 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 CXCL14O95715 111 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 NPR2P20594 1047 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 DCKP27707 260 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 WASP42768 502 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 MLLT1Q03111 559 aaPredicted RBP18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 SNTB2Q13425 540 aaKnown RBP18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 POGLUT1Q8NBL1 392 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 ADAD1Q96M93 576 aaKnown RBP18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 BCL7BQ9BQE9 202 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 CCSER2Q9H7U1 834 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 NUFIP1Q9UHK0 495 aaKnown RBP18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 PLEKHA6Q9Y2H5 1048 aa18.85■□□□□ 0.61
CCDC88B-202ENST00000356786 CDC40O60508 579 aaKnown RBP eCLIP18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 RENP00797 406 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 GGT1P19440 569 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 PSMD8P48556 350 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 GFOD2Q3B7J2 385 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 FAAH2Q6GMR7 532 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 KIF18BQ86Y91 864 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 SHKBP1Q8TBC3 707 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 AHDC1Q5TGY3 1603 aaPredicted RBP18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 NUP188Q5SRE5 1749 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 EPHX1P07099 455 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 MINDY4Q4G0A6 757 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 UBE2Q1Q7Z7E8 422 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 OR6C4Q8NGE1 309 aa18.84■□□□□ 0.61
CCDC88B-202ENST00000356786 ZNF514Q96K75 400 aaPredicted RBP18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms