RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 SSR3Q9UNL2 185 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 DNMT3AQ9Y6K1 912 aaPredicted RBP13.19□□□□□ -0.3
SYNE3-201ENST00000334258 KDELR3O43731 214 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 PCDH7O60245 1069 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 ALDH1A1P00352 501 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 OR3A3P47888 321 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 PRIM2P49643 509 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 ATXN7L2Q5T6C5 722 aaPredicted RBP13.19□□□□□ -0.3
SYNE3-201ENST00000334258 RNF219Q5W0B1 726 aaPredicted RBP13.19□□□□□ -0.3
SYNE3-201ENST00000334258 PIH1D2Q8WWB5 315 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 DEDD2Q8WXF8 326 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 EID2BQ96D98 161 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 FAM129BQ96TA1 746 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 DUSP26Q9BV47 211 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 GON7Q9BXV9 100 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 TM6SF2Q9BZW4 377 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 POLR2J2Q9GZM3 115 aaKnown RBP13.19□□□□□ -0.3
SYNE3-201ENST00000334258 SRRQ9GZT4 340 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 ATG10Q9H0Y0 220 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 RNF121Q9H920 327 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 C11orf16Q9NQ32 467 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 RHCGQ9UBD6 479 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 SLC22A14Q9Y267 594 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 PCDHB11Q9Y5F2 797 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 SCN10AQ9Y5Y9 1956 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 SPTBN5Q9NRC6 3674 aaKnown RBP13.19□□□□□ -0.3
SYNE3-201ENST00000334258 J3KTA2 159 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 CYP17A1P05093 508 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 HOXB9P17482 250 aaPredicted RBP13.19□□□□□ -0.3
SYNE3-201ENST00000334258 AMD1P17707 334 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 ERP29P30040 261 aaKnown RBP13.19□□□□□ -0.3
SYNE3-201ENST00000334258 CNR2P34972 360 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 RHOAP61586 193 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 ACSM2AQ08AH3 577 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 VEPH1Q14D04 833 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 MICAQ29983 383 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 PTCHD3Q3KNS1 767 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 IFI44LQ53G44 452 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.19□□□□□ -0.3
SYNE3-201ENST00000334258 FRG2Q64ET8 278 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 ACSM2BQ68CK6 577 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 VN1R5Q7Z5H4 357 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 NLRP8Q86W28 1048 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 LINC00469Q8N7U9 141 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 LINC01599Q8WXQ3 324 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 RNF170Q96K19 258 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 FRG2BQ96QU4 278 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 ACOXLQ9NUZ1 547 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 CLEC2DQ9UHP7 191 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 POLHQ9Y253 713 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 USP34Q70CQ2 3546 aa13.19□□□□□ -0.3
SYNE3-201ENST00000334258 A0A1W2PQL4 384 aaPredicted RBP13.18□□□□□ -0.3
SYNE3-201ENST00000334258 B4DXG7 233 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 PCDH17O14917 1159 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 HLA-EP13747 358 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 RPL17P18621 184 aaKnown RBP13.18□□□□□ -0.3
SYNE3-201ENST00000334258 TYMPP19971 482 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 SLC11A2P49281 568 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 SELENOWP63302 87 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 HOXC5Q00444 222 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 SEMG2Q02383 582 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 FAPQ12884 760 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 SPHARQ15513 63 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 CCDC85BQ15834 202 aaPredicted RBP13.18□□□□□ -0.3
SYNE3-201ENST00000334258 CLLU1OSQ5K130 101 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 LHX8Q68G74 356 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 UBE2R2Q712K3 238 aaPredicted RBP13.18□□□□□ -0.3
SYNE3-201ENST00000334258 TMEM173Q86WV6 379 aaPredicted RBP13.18□□□□□ -0.3
SYNE3-201ENST00000334258 PGBD3Q8N328 593 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 DACT3Q96B18 629 aaPredicted RBP13.18□□□□□ -0.3
SYNE3-201ENST00000334258 TTLL2Q9BWV7 592 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 CDCA4Q9BXL8 241 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 UCK2Q9BZX2 261 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 FAM8A1Q9UBU6 413 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 PADI2Q9Y2J8 665 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 HSPB11Q9Y547 144 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 H7C0S8 307 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 AKR7A2O43488 359 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 NOS1APO75052 506 aaPredicted RBP13.18□□□□□ -0.3
SYNE3-201ENST00000334258 ADRA2AP08913 450 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 TRAPPC2P0DI81 140 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 TRAPPC2BP0DI82 140 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 PSKH1P11801 424 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 HMGCLP35914 325 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 FEN1P39748 380 aaKnown RBP13.18□□□□□ -0.3
SYNE3-201ENST00000334258 PSPHP78330 225 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 POU6F2P78424 691 aaPredicted RBP13.18□□□□□ -0.3
SYNE3-201ENST00000334258 BNC1Q01954 994 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 HYAL2Q12891 473 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 DUSP7Q16829 419 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 BTBD16Q32M84 506 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 CPTPQ5TA50 214 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 LIPKQ5VXJ0 399 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 SLC51BQ86UW2 128 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 AQP11Q8NBQ7 271 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 OPALINQ96PE5 141 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 MKRN2Q9H000 416 aaKnown RBP13.18□□□□□ -0.3
SYNE3-201ENST00000334258 RNF208Q9H0X6 261 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 HHATLQ9HCP6 504 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 DNAJC27Q9NZQ0 273 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms