RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 MDS2Q8NDY4 140 aa18.3■□□□□ 0.52
LIME1-201ENST00000309546 ARMC2Q8NEN0 867 aa18.3■□□□□ 0.52
LIME1-201ENST00000309546 FBXO25Q8TCJ0 367 aa18.3■□□□□ 0.52
LIME1-201ENST00000309546 CAPS2Q9BXY5 557 aa18.3■□□□□ 0.52
LIME1-201ENST00000309546 GPRC5BQ9NZH0 403 aa18.3■□□□□ 0.52
LIME1-201ENST00000309546 SH3BGRL2Q9UJC5 107 aa18.3■□□□□ 0.52
LIME1-201ENST00000309546 RNF112Q9ULX5 631 aa18.3■□□□□ 0.52
LIME1-201ENST00000309546 TRGV8A0A0C4DH27 118 aa18.29■□□□□ 0.52
LIME1-201ENST00000309546 TCRBV16S1A1N1A0A5B0 115 aa18.29■□□□□ 0.52
LIME1-201ENST00000309546 ANKDD1BA6NHY2 528 aa18.29■□□□□ 0.52
LIME1-201ENST00000309546 SAGE2PA6NJ88 616 aa18.29■□□□□ 0.52
LIME1-201ENST00000309546 CCNT2O60583 730 aaKnown RBP18.29■□□□□ 0.52
LIME1-201ENST00000309546 STK16O75716 305 aa18.29■□□□□ 0.52
LIME1-201ENST00000309546 FAM155BO75949 473 aa18.29■□□□□ 0.52
LIME1-201ENST00000309546 CD46P15529 392 aa18.29■□□□□ 0.52
LIME1-201ENST00000309546 EEF1DP29692 281 aaKnown RBP18.29■□□□□ 0.52
LIME1-201ENST00000309546 SPRP35270 261 aaPredicted RBP18.29■□□□□ 0.52
LIME1-201ENST00000309546 DCTP40126 519 aa18.29■□□□□ 0.52
LIME1-201ENST00000309546 PLA2G16P53816 162 aa18.29■□□□□ 0.52
LIME1-201ENST00000309546 CAV1Q03135 178 aa18.29■□□□□ 0.52
LIME1-201ENST00000309546 ZRSR2Q15696 482 aaKnown RBP18.29■□□□□ 0.52
LIME1-201ENST00000309546 ZKSCAN8Q15776 578 aaPredicted RBP18.29■□□□□ 0.52
LIME1-201ENST00000309546 PDK4Q16654 411 aa18.29■□□□□ 0.52
LIME1-201ENST00000309546 XKR6Q5GH73 641 aa18.29■□□□□ 0.52
LIME1-201ENST00000309546 SULT1C3Q6IMI6 304 aa18.29■□□□□ 0.52
LIME1-201ENST00000309546 ADNP2Q6IQ32 1131 aa18.29■□□□□ 0.52
LIME1-201ENST00000309546 RAPH1Q70E73 1250 aa18.29■□□□□ 0.52
LIME1-201ENST00000309546 RPS19BP1Q86WX3 136 aaKnown RBP18.29■□□□□ 0.52
LIME1-201ENST00000309546 ELP5Q8TE02 316 aa18.29■□□□□ 0.52
LIME1-201ENST00000309546 MS4A6EQ96DS6 147 aa18.29■□□□□ 0.52
LIME1-201ENST00000309546 A0A088AWK7 358 aa18.28■□□□□ 0.52
LIME1-201ENST00000309546 IGKV3D-11A0A0A0MRZ8 115 aa18.28■□□□□ 0.52
LIME1-201ENST00000309546 ZNF10P21506 573 aaPredicted RBP18.28■□□□□ 0.52
LIME1-201ENST00000309546 GSTM2P28161 218 aa18.28■□□□□ 0.52
LIME1-201ENST00000309546 STX2P32856 288 aa18.28■□□□□ 0.52
LIME1-201ENST00000309546 MAGEA4P43358 317 aa18.28■□□□□ 0.52
LIME1-201ENST00000309546 ETF1P62495 437 aaKnown RBP18.28■□□□□ 0.52
LIME1-201ENST00000309546 RUNX2Q13950 521 aa18.28■□□□□ 0.52
LIME1-201ENST00000309546 EFTUD2Q15029 972 aaKnown RBP eCLIP18.28■□□□□ 0.523e-6■■■■□ 26.3
LIME1-201ENST00000309546 TRADDQ15628 312 aa18.28■□□□□ 0.52
LIME1-201ENST00000309546 GRTP1Q5TC63 336 aa18.28■□□□□ 0.52
LIME1-201ENST00000309546 TRIM40Q6P9F5 258 aa18.28■□□□□ 0.52
LIME1-201ENST00000309546 CMC1Q7Z7K0 106 aa18.28■□□□□ 0.52
LIME1-201ENST00000309546 LGI4Q8N135 537 aa18.28■□□□□ 0.52
LIME1-201ENST00000309546 FAM47BQ8NA70 645 aa18.28■□□□□ 0.52
LIME1-201ENST00000309546 TMEM178AQ8NBL3 297 aa18.28■□□□□ 0.52
LIME1-201ENST00000309546 FBF1Q8TES7 1133 aa18.28■□□□□ 0.52
LIME1-201ENST00000309546 PHACTR1Q9C0D0 580 aa18.28■□□□□ 0.52
LIME1-201ENST00000309546 REXO4Q9GZR2 422 aaKnown RBP18.28■□□□□ 0.52
LIME1-201ENST00000309546 ALG9Q9H6U8 611 aa18.28■□□□□ 0.52
LIME1-201ENST00000309546 COPS7BQ9H9Q2 264 aaPredicted RBP18.28■□□□□ 0.52
LIME1-201ENST00000309546 LRFN1Q9P244 771 aa18.28■□□□□ 0.52
LIME1-201ENST00000309546 MMACHCQ9Y4U1 282 aa18.28■□□□□ 0.52
LIME1-201ENST00000309546 MYO7BQ6PIF6 2116 aa18.28■□□□□ 0.52
LIME1-201ENST00000309546 LRIT2A6NDA9 550 aa18.27■□□□□ 0.52
LIME1-201ENST00000309546 B3GALT2O43825 422 aa18.27■□□□□ 0.52
LIME1-201ENST00000309546 PRAMEF4O60810 478 aa18.27■□□□□ 0.52
LIME1-201ENST00000309546 CLEC3AO75596 197 aa18.27■□□□□ 0.52
LIME1-201ENST00000309546 C1QAP02745 245 aa18.27■□□□□ 0.52
LIME1-201ENST00000309546 TPP2P29144 1249 aaPredicted RBP18.27■□□□□ 0.52
LIME1-201ENST00000309546 GGT5P36269 586 aa18.27■□□□□ 0.52
LIME1-201ENST00000309546 RAB38P57729 211 aa18.27■□□□□ 0.52
LIME1-201ENST00000309546 RBPJQ06330 500 aa18.27■□□□□ 0.52
LIME1-201ENST00000309546 DOC2AQ14183 400 aa18.27■□□□□ 0.52
LIME1-201ENST00000309546 PRAMEF9Q5VWM5 478 aa18.27■□□□□ 0.52
LIME1-201ENST00000309546 ZDHHC24Q6UX98 284 aa18.27■□□□□ 0.52
LIME1-201ENST00000309546 CYS1Q717R9 158 aa18.27■□□□□ 0.52
LIME1-201ENST00000309546 GALNTL5Q7Z4T8 443 aa18.27■□□□□ 0.52
LIME1-201ENST00000309546 VN1R5Q7Z5H4 357 aa18.27■□□□□ 0.52
LIME1-201ENST00000309546 HORMAD2Q8N7B1 307 aa18.27■□□□□ 0.52
LIME1-201ENST00000309546 FAM98AQ8NCA5 519 aaKnown RBP18.27■□□□□ 0.52
LIME1-201ENST00000309546 PDPRQ8NCN5 879 aa18.27■□□□□ 0.52
LIME1-201ENST00000309546 KIAA1191Q96A73 305 aa18.27■□□□□ 0.52
LIME1-201ENST00000309546 PTCD3Q96EY7 689 aaKnown RBP18.27■□□□□ 0.52
LIME1-201ENST00000309546 SCMH1Q96GD3 660 aa18.27■□□□□ 0.52
LIME1-201ENST00000309546 PITHD1Q9GZP4 211 aaPredicted RBP18.27■□□□□ 0.52
LIME1-201ENST00000309546 TSPAN10Q9H1Z9 355 aaPredicted RBP18.27■□□□□ 0.52
LIME1-201ENST00000309546 EHD1Q9H4M9 534 aa18.27■□□□□ 0.52
LIME1-201ENST00000309546 NT5DC2Q9H857 520 aa18.27■□□□□ 0.52
LIME1-201ENST00000309546 PRTFDC1Q9NRG1 225 aa18.27■□□□□ 0.52
LIME1-201ENST00000309546 PNO1Q9NRX1 252 aaKnown RBP18.27■□□□□ 0.52
LIME1-201ENST00000309546 COPG2Q9UBF2 871 aa18.27■□□□□ 0.52
LIME1-201ENST00000309546 PCDHGB6Q9Y5F9 930 aa18.27■□□□□ 0.52
LIME1-201ENST00000309546 CACNA1DQ01668 2161 aa18.27■□□□□ 0.51
LIME1-201ENST00000309546 TRBV11-1A0A0K0K1C0 115 aa18.26■□□□□ 0.51
LIME1-201ENST00000309546 ESYT3A0FGR9 886 aa18.26■□□□□ 0.51
LIME1-201ENST00000309546 SUPT3HB4E1H0 165 aa18.26■□□□□ 0.51
LIME1-201ENST00000309546 SUPT3HO75486 399 aa18.26■□□□□ 0.51
LIME1-201ENST00000309546 MYO1DO94832 1006 aa18.26■□□□□ 0.51
LIME1-201ENST00000309546 TFEBP19484 476 aa18.26■□□□□ 0.51
LIME1-201ENST00000309546 CERS1P27544 350 aa18.26■□□□□ 0.51
LIME1-201ENST00000309546 HPDP32754 393 aaPredicted RBP18.26■□□□□ 0.51
LIME1-201ENST00000309546 ALDH6A1Q02252 535 aaKnown RBP18.26■□□□□ 0.51
LIME1-201ENST00000309546 SLC13A2Q13183 592 aa18.26■□□□□ 0.51
LIME1-201ENST00000309546 CDKL4Q5MAI5 379 aa18.26■□□□□ 0.51
LIME1-201ENST00000309546 ZNF468Q5VIY5 522 aaPredicted RBP18.26■□□□□ 0.51
LIME1-201ENST00000309546 TBC1D1Q86TI0 1168 aaPredicted RBP18.26■□□□□ 0.51
LIME1-201ENST00000309546 NFAM1Q8NET5 270 aaPredicted RBP18.26■□□□□ 0.51
LIME1-201ENST00000309546 OR2L5Q8NG80 312 aa18.26■□□□□ 0.51
LIME1-201ENST00000309546 RELTQ969Z4 430 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms