RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 VMP1Q96GC9 406 aa13.78□□□□□ -0.2
CCDC88B-201ENST00000301897 POM121Q96HA1 1249 aa13.78□□□□□ -0.2
CCDC88B-201ENST00000301897 SEC16BQ96JE7 1060 aa13.78□□□□□ -0.2
CCDC88B-201ENST00000301897 SLC6A16Q9GZN6 736 aa13.78□□□□□ -0.2
CCDC88B-201ENST00000301897 PELI2Q9HAT8 420 aa13.78□□□□□ -0.2
CCDC88B-201ENST00000301897 ZFATQ9P243 1243 aa13.78□□□□□ -0.2
CCDC88B-201ENST00000301897 FBXW2Q9UKT8 454 aa13.78□□□□□ -0.2
CCDC88B-201ENST00000301897 PPIEQ9UNP9 301 aaKnown RBP13.78□□□□□ -0.2
CCDC88B-201ENST00000301897 ERVK-11Q9UQG0 969 aa13.78□□□□□ -0.2
CCDC88B-201ENST00000301897 NKX2-6A6NCS4 301 aa13.77□□□□□ -0.21
CCDC88B-201ENST00000301897 OR14I1A6ND48 311 aa13.77□□□□□ -0.21
CCDC88B-201ENST00000301897 FIGNL2A6NMB9 653 aa13.77□□□□□ -0.21
CCDC88B-201ENST00000301897 MYO1DO94832 1006 aa13.77□□□□□ -0.21
CCDC88B-201ENST00000301897 ZWINTO95229 277 aa13.77□□□□□ -0.21
CCDC88B-201ENST00000301897 SERPINA6P08185 405 aa13.77□□□□□ -0.21
CCDC88B-201ENST00000301897 F7P08709 466 aaPredicted RBP13.77□□□□□ -0.21
CCDC88B-201ENST00000301897 ENO2P09104 434 aaPredicted RBP13.77□□□□□ -0.21
CCDC88B-201ENST00000301897 CD99P14209 185 aa13.77□□□□□ -0.21
CCDC88B-201ENST00000301897 CDC25BP30305 580 aa13.77□□□□□ -0.21
CCDC88B-201ENST00000301897 MAGEA3P43357 314 aa13.77□□□□□ -0.21
CCDC88B-201ENST00000301897 FOLH1Q04609 750 aa13.77□□□□□ -0.21
CCDC88B-201ENST00000301897 MYBPHQ13203 477 aa13.77□□□□□ -0.21
CCDC88B-201ENST00000301897 PAQR3Q6TCH7 311 aa13.77□□□□□ -0.21
CCDC88B-201ENST00000301897 SLC22A16Q86VW1 577 aa13.77□□□□□ -0.21
CCDC88B-201ENST00000301897 C2CD4AQ8NCU7 369 aaPredicted RBP13.77□□□□□ -0.21
CCDC88B-201ENST00000301897 OR5M3Q8NGP4 307 aa13.77□□□□□ -0.21
CCDC88B-201ENST00000301897 PYCR2Q96C36 320 aa13.77□□□□□ -0.21
CCDC88B-201ENST00000301897 AIF1LQ9BQI0 150 aa13.77□□□□□ -0.21
CCDC88B-201ENST00000301897 NECTIN3Q9NQS3 549 aa13.77□□□□□ -0.21
CCDC88B-201ENST00000301897 IARS2Q9NSE4 1012 aaKnown RBP13.77□□□□□ -0.21
CCDC88B-201ENST00000301897 EDARQ9UNE0 448 aa13.77□□□□□ -0.21
CCDC88B-201ENST00000301897 HRH3Q9Y5N1 445 aa13.77□□□□□ -0.21
CCDC88B-201ENST00000301897 FLNAP21333 2647 aaKnown RBP13.77□□□□□ -0.21
CCDC88B-201ENST00000301897 A0A088AWK7 358 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 A8MUA0 341 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 A8MVJ9 347 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 FAM47E-STBD1D6RA91 191 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 GOLGA8MH3BSY2 632 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 CLDN4O14493 209 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 BCKDKO14874 412 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 DNAJB6O75190 326 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 ZFAND5O76080 213 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 NADKO95544 446 aaPredicted RBP13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 TTC4O95801 387 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 ZNF10P21506 573 aaPredicted RBP13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 DNAJA1P31689 397 aaKnown RBP13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 GPR85P60893 370 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 STXBP1P61764 594 aaKnown RBP13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 PPIAP62937 165 aaKnown RBP13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 REEP5Q00765 189 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 TIAL1Q01085 375 aaKnown RBP eCLIP13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 PLGLB1Q02325 96 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 NDUFAF5Q5TEU4 345 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 GK5Q6ZS86 529 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 MDGA2Q7Z553 956 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 GALNT7Q86SF2 657 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 PSD4Q8NDX1 1056 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 TRIM58Q8NG06 486 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 TTLQ8NG68 377 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 OR52N2Q8NGI0 321 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 NEIL2Q969S2 332 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 FAR2Q96K12 515 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 SIGLEC10Q96LC7 697 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 OR4K3Q96R72 315 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 NDNQ99608 321 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 FOXC2Q99958 501 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 TMUB1Q9BVT8 246 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 NPLQ9BXD5 320 aaPredicted RBP13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 UCK2Q9BZX2 261 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 RHBGQ9H310 441 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 ZDHHC11Q9H8X9 412 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 HPF1Q9NWY4 346 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 MRPS33Q9Y291 106 aaKnown RBP13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 DYRK1BQ9Y463 629 aa13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 PRRC2AP48634 2157 aaKnown RBP13.76□□□□□ -0.21
CCDC88B-201ENST00000301897 KLK8O60259 260 aa13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 PDE9AO76083 593 aa13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 B3GALT4O96024 378 aa13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 SMIM10L1P0DMW3 83 aa13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 PGAM1P18669 254 aa13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 ACVR2AP27037 513 aa13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 HPDP32754 393 aaPredicted RBP13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 PEX19P40855 299 aa13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 HSD17B7P56937 341 aa13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 NUP107P57740 925 aa13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 RAB8AP61006 207 aa13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 PDAP1Q13442 181 aaKnown RBP13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 KCTD19Q17RG1 926 aaPredicted RBP13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 EMC4Q5J8M3 183 aa13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 CATSPEREQ5SY80 951 aa13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 HECTD2Q5U5R9 776 aa13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 ZNF662Q6ZS27 426 aa13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 CCDC71Q8IV32 467 aaPredicted RBP13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 SCUBE1Q8IWY4 988 aa13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 CA13Q8N1Q1 262 aa13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 SPC24Q8NBT2 197 aa13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 OR10Q1Q8NGQ4 319 aa13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 ASB15Q8WXK1 588 aa13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 NCLNQ969V3 563 aa13.75□□□□□ -0.21
CCDC88B-201ENST00000301897 SMIM10Q96HG1 83 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms