RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 LPOP22079 712 aaPredicted RBP6.2□□□□□ -1.42
VPS35-201ENST00000299138 KELP23276 732 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 NMBRP28336 390 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 ZNF616Q08AN1 781 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 MAP4K2Q12851 820 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 SOWAHAQ2M3V2 549 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 RAB41Q5JT25 222 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 GPR149Q86SP6 731 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 CASTOR1Q8WTX7 329 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 KHSRPQ92945 711 aaKnown RBP eCLIP6.2□□□□□ -1.42
VPS35-201ENST00000299138 ELMO3Q96BJ8 720 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 PDGFDQ9GZP0 370 aaPredicted RBP6.2□□□□□ -1.42
VPS35-201ENST00000299138 PPIL3Q9H2H8 161 aaKnown RBP6.2□□□□□ -1.42
VPS35-201ENST00000299138 ANKRA2Q9H9E1 313 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 RDH14Q9HBH5 336 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 FBRSL1Q9HCM7 1045 aaKnown RBP6.2□□□□□ -1.42
VPS35-201ENST00000299138 ABCB8Q9NUT2 735 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 PDP1Q9P0J1 537 aaPredicted RBP6.2□□□□□ -1.42
VPS35-201ENST00000299138 RPL36Q9Y3U8 105 aaKnown RBP6.2□□□□□ -1.42
VPS35-201ENST00000299138 SMIM28A0A1B0GU29 152 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 TMEM150BA6NC51 233 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 PIP5K1CO60331 668 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 UGDHO60701 494 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 ALX3O95076 343 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 NR2F1P10589 423 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 ZNF16P17020 682 aaPredicted RBP6.19□□□□□ -1.42
VPS35-201ENST00000299138 TSPAN8P19075 237 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 TGM1P22735 817 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 ADORA2AP29274 412 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 ADRA1AP35348 466 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 STT3AP46977 705 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 CLCN3P51790 818 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 SLC10A2Q12908 348 aaPredicted RBP6.19□□□□□ -1.42
VPS35-201ENST00000299138 GGTA1PQ4G0N0 100 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 ZNF691Q5VV52 312 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 CAPN13Q6MZZ7 669 aaPredicted RBP6.19□□□□□ -1.42
VPS35-201ENST00000299138 SMIM15Q7Z3B0 74 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 UEVLDQ8IX04 471 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 CREB3L1Q96BA8 519 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 FCRL3Q96P31 734 aaPredicted RBP6.19□□□□□ -1.42
VPS35-201ENST00000299138 TKTL2Q9H0I9 626 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 EVA1AQ9H8M9 152 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 POT1Q9NUX5 634 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 ADGRE2Q9UHX3 823 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 ENTPD4Q9Y227 616 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 TNFSF12-TNFSF13A0A0A6YY99 330 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 ISM1B1AKI9 464 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 M0R129 80 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 MAGEB4O15481 346 aaPredicted RBP6.19□□□□□ -1.42
VPS35-201ENST00000299138 TNFSF12O43508 249 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 GLUD1P00367 558 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 FTH1P02794 183 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 PFKMP08237 780 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 TPH1P17752 444 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 DLSTP36957 453 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 C19orf57Q0VDD7 668 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 ELP2Q6IA86 826 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 POMZP3Q6PJE2 187 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 USP30Q70CQ3 517 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 MIB1Q86YT6 1006 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 RIMKLAQ8IXN7 391 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 C12orf45Q8N5I9 185 aaPredicted RBP6.19□□□□□ -1.42
VPS35-201ENST00000299138 ZNF709Q8N972 641 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 SCGB1C1Q8TD33 95 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 FBLIM1Q8WUP2 373 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 SLC35B4Q969S0 331 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 REEP4Q9H6H4 257 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 ZFP14Q9HCL3 533 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 ASF1BQ9NVP2 202 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 SLX4Q8IY92 1834 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 F5H0A9 414 aaPredicted RBP6.19□□□□□ -1.42
VPS35-201ENST00000299138 MT-ND1P03886 318 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 IL7P13232 177 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 DCTP40126 519 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 CRYBB1P53674 252 aaPredicted RBP6.19□□□□□ -1.42
VPS35-201ENST00000299138 PPP3R1P63098 170 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 KCNJ8Q15842 424 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 NIPAL3Q6P499 406 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 SCIMPQ6UWF3 145 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 ISCA2Q86U28 154 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 ST7LQ8TDW4 575 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 JPH3Q8WXH2 748 aaPredicted RBP6.19□□□□□ -1.42
VPS35-201ENST00000299138 TIFAQ96CG3 184 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 PYURFQ96I23 114 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 ZNF578Q96N58 590 aaPredicted RBP6.19□□□□□ -1.42
VPS35-201ENST00000299138 EPYCQ99645 322 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 SLC30A3Q99726 388 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 SLC30A2Q9BRI3 323 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 TCEAL7Q9BRU2 100 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 GLIS2Q9BZE0 524 aaPredicted RBP6.19□□□□□ -1.42
VPS35-201ENST00000299138 DCAF13Q9NV06 445 aaKnown RBP6.19□□□□□ -1.42
VPS35-201ENST00000299138 TCRBV5S2A0A599 114 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 ZNF878C9JN71 531 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 OXSR1O95747 527 aaPredicted RBP6.19□□□□□ -1.42
VPS35-201ENST00000299138 S1PR4O95977 384 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 RD3LP0DJH9 198 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 CYP2A7P20853 494 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 ACSL1P33121 698 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 KIR3DL1P43629 444 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 CDK10Q15131 360 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms