RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 ALG10Q5BKT4 473 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 C1orf220Q5T0J3 134 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 WDTC1Q8N5D0 677 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 OR5L2Q8NGL0 311 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 PHOSPHO1Q8TCT1 267 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 FOXJ1Q92949 421 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 CDCA3Q99618 268 aaPredicted RBP18.48■□□□□ 0.55
UPF1-201ENST00000262803 B3GNT4Q9C0J1 378 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 IL23AQ9NPF7 189 aa18.48■□□□□ 0.55
UPF1-201ENST00000262803 A8MUA0 341 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 REEP3Q6NUK4 255 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 DAZLQ92904 295 aaKnown RBP18.47■□□□□ 0.55
UPF1-201ENST00000262803 ITPAQ9BY32 194 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 DCSTAMPQ9H295 470 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 SPHK2Q9NRA0 654 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 KANTRA0A1W2PQU2 76 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 DISC1C4P0D8 188 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 PDHA2P29803 388 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 SLC15A1P46059 708 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 MAD2L1BPQ15013 274 aaPredicted RBP18.47■□□□□ 0.55
UPF1-201ENST00000262803 ZNF101Q8IZC7 436 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 KCNN1Q92952 543 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 NINJ1Q92982 152 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 RFT1Q96AA3 541 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 PKP4Q99569 1192 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 YIPF4Q9BSR8 244 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 DPP6P42658 865 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 CDKN1CP49918 316 aaPredicted RBP18.47■□□□□ 0.55
UPF1-201ENST00000262803 GBX1Q14549 363 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 DHCR24Q15392 516 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 GRHL2Q6ISB3 625 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 KIAA1161Q6NSJ0 714 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 AUTS2Q8WXX7 1259 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 NKD1Q969G9 470 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 PLEKHA6Q9Y2H5 1048 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 ZNF878C9JN71 531 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 LY6G5CQ5SRR4 150 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 PXYLP1Q8TE99 480 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 NAA11Q9BSU3 229 aaPredicted RBP18.47■□□□□ 0.55
UPF1-201ENST00000262803 CCDC106Q9BWC9 280 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 REEP4Q9H6H4 257 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 B4GALT6Q9UBX8 382 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 BAIAP2Q9UQB8 552 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 M0QX08 132 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 TRAPPC6AO75865 159 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 ARPC4P59998 168 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 EMC10Q5UCC4 262 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 ASPGQ86U10 573 aa18.47■□□□□ 0.55
UPF1-201ENST00000262803 GJA1P17302 382 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 NUDT6P53370 316 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 RPS3AP61247 264 aaKnown RBP18.46■□□□□ 0.55
UPF1-201ENST00000262803 OR8H1Q8NGG4 311 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 OR10Q1Q8NGQ4 319 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 HS6ST2Q96MM7 605 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 ZFP3Q96NJ6 502 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 FCRL3Q96P31 734 aaPredicted RBP18.46■□□□□ 0.55
UPF1-201ENST00000262803 ZNF382Q96SR6 550 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 TUBA1CQ9BQE3 449 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 SEC61A2Q9H9S3 476 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 TPT1P8Q9HAU6 139 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 TMEM165Q9HC07 324 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 NCDNQ9UBB6 729 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 WDR45Q9Y484 360 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 FAM72CH0Y354 149 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 ZNF217O75362 1048 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 SYPP08247 313 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 ADAM17P78536 824 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 TMEM115Q12893 351 aaPredicted RBP18.46■□□□□ 0.55
UPF1-201ENST00000262803 FADDQ13158 208 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 TMEM35AQ53FP2 167 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 FAM72AQ5TYM5 149 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 FAM72DQ6L9T8 149 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 ZER1Q7Z7L7 766 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 C14orf80Q86SX3 495 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 AMIGO3Q86WK7 504 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 FAM72BQ86X60 149 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 ARHGAP12Q8IWW6 846 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 AKAP1Q92667 903 aaKnown RBP eCLIP18.46■□□□□ 0.553e-7■■■■■ 28.2
UPF1-201ENST00000262803 FBXL20Q96IG2 436 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 PTBP2Q9UKA9 531 aaKnown RBP18.46■□□□□ 0.55
UPF1-201ENST00000262803 RNF11Q9Y3C5 154 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 C5orf51A6NDU8 294 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 NUDT1P36639 197 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 PREPP48147 710 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 SOX9P48436 509 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 RPS15AP62244 130 aaKnown RBP18.46■□□□□ 0.55
UPF1-201ENST00000262803 ZNF782Q6ZMW2 699 aaPredicted RBP18.46■□□□□ 0.55
UPF1-201ENST00000262803 PLEKHG7Q6ZR37 379 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 MARCH9Q86YJ5 346 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 CCDC115Q96NT0 180 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 MKLN1Q9UL63 735 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 PCDHGA10Q9Y5H3 936 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 ZNF623O75123 536 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 DIRAS1O95057 198 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 MT-ND5P03915 603 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 CAPZA1P52907 286 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 OR12D2P58182 307 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 ZNF615Q8N8J6 731 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 KCT2Q8NC54 265 aa18.46■□□□□ 0.55
UPF1-201ENST00000262803 NFKBIDQ8NI38 313 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms