RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 MSL3P1P0C860 447 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 CD79AP11912 226 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 SMSP52788 366 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 DAOAP59103 153 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 NRG1Q02297 640 aaPredicted RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 SEMG2Q02383 582 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 SLC34A1Q06495 639 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 LACTB2Q53H82 288 aaPredicted RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 CRB2Q5IJ48 1285 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 C3orf38Q5JPI3 329 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 TSTD2Q5T7W7 516 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 DRICH1Q6PGQ1 229 aaPredicted RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 TMIGD1Q6UXZ0 262 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 HACD2Q6Y1H2 254 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 SVOPLQ8N434 492 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 OR2L2Q8NH16 312 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 LPGAT1Q92604 370 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 MSI2Q96DH6 328 aaKnown RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 SFXN2Q96NB2 322 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 TLR10Q9BXR5 811 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 HOXD1Q9GZZ0 328 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 PRPF19Q9UMS4 504 aaKnown RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 CHD2O14647 1828 aaKnown RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 KDELR3O43731 214 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 DIRAS3O95661 229 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 CSF2P04141 144 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 CD3GP09693 182 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 H2BFMP0C1H6 154 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 ZNF12P17014 697 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 PON3Q15166 354 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 RPL13AP3Q6NVV1 102 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 CLNKQ7Z7G1 428 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 NRROSQ86YC3 692 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 NAT14Q8WUY8 206 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 TIMD4Q96H15 378 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 PGAM5Q96HS1 289 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 PPM1MQ96MI6 270 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 C12orf4Q9NQ89 552 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 FLRT1Q9NZU1 646 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 SRPK3Q9UPE1 567 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 FZD9O00144 591 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 CD6P30203 668 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 AP2S1P53680 142 aaPredicted RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 MYBPHQ13203 477 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 TIGD2Q4W5G0 525 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 CEACAM20Q6UY09 585 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 THOC6Q86W42 341 aaKnown RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 IL31RAQ8NI17 732 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 NMD3Q96D46 503 aaKnown RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 LENG8Q96PV6 779 aaPredicted RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 TBC1D17Q9HA65 648 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 ZDHHC7Q9NXF8 308 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 AP1M2Q9Y6Q5 423 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 ATRNL1Q5VV63 1379 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 SCO2O43819 266 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 RPS24P62847 133 aaKnown RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 ABATP80404 500 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 PLEKHN1Q494U1 663 aaPredicted RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 CHRFAM7AQ494W8 412 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 GPR65Q8IYL9 337 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 FBXW8Q8N3Y1 598 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 NOA1Q8NC60 698 aaKnown RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 CAVIN3Q969G5 261 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 TSACCQ96A04 125 aaPredicted RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 ALPK1Q96QP1 1244 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 WDR12Q9GZL7 423 aaKnown RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 GNG8Q9UK08 70 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 WBP11Q9Y2W2 641 aaKnown RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 LRRTM2O43300 516 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 ITGB5P18084 799 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 GSTM2P28161 218 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 GNRHRP30968 328 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 ACSL1P33121 698 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 CPOXP36551 454 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 SLC11A1P49279 550 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 SEC24CP53992 1094 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 LGALS4P56470 323 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 NOMO3P69849 1222 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 ZYG11AQ6WRX3 759 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 WDSUB1Q8N9V3 476 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 SGIP1Q9BQI5 828 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 TPSD1Q9BZJ3 242 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 SLC19A3Q9BZV2 496 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 ENKD1Q9H0I2 346 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 CCSER2Q9H7U1 834 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 TRIM36Q9NQ86 728 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 U3KQV3 271 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 ANKRD36CQ5JPF3 1778 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 TEX13DA0A0J9YY54 714 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-217ENST00000637988 A0A1W2PQU0 124 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 LRRC30A6NM36 301 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 GABRR3A8MPY1 467 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 GRXCR1A8MXD5 290 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 SHOXO15266 292 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 SLC7A4O43246 635 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 ATP6AP2O75787 350 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 EPHA3P29320 983 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 SCTRP47872 440 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 GPR143P51810 404 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 CDH12P55289 794 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms