RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 ADORA2A-AS1P86434 159 aa16.48■□□□□ 0.23
SHKBP1-223ENST00000600552 REEP5Q00765 189 aa16.48■□□□□ 0.23
SHKBP1-223ENST00000600552 KRTCAP3Q53RY4 240 aa16.48■□□□□ 0.23
SHKBP1-223ENST00000600552 SBSNQ6UWP8 590 aa16.48■□□□□ 0.23
SHKBP1-223ENST00000600552 RPTNQ6XPR3 784 aa16.48■□□□□ 0.23
SHKBP1-223ENST00000600552 BNC2Q6ZN30 1099 aaPredicted RBP16.48■□□□□ 0.23
SHKBP1-223ENST00000600552 CAPN12Q6ZSI9 719 aa16.48■□□□□ 0.23
SHKBP1-223ENST00000600552 FRA10AC1Q70Z53 315 aa16.48■□□□□ 0.23
SHKBP1-223ENST00000600552 STRA8Q7Z7C7 330 aa16.48■□□□□ 0.23
SHKBP1-223ENST00000600552 SPPL2CQ8IUH8 684 aa16.48■□□□□ 0.23
SHKBP1-223ENST00000600552 CPSF7Q8N684 471 aaKnown RBP16.48■□□□□ 0.23
SHKBP1-223ENST00000600552 ANKRD53Q8N9V6 530 aa16.48■□□□□ 0.23
SHKBP1-223ENST00000600552 DEFB126Q9BYW3 111 aa16.48■□□□□ 0.23
SHKBP1-223ENST00000600552 NECTIN3Q9NQS3 549 aa16.48■□□□□ 0.23
SHKBP1-223ENST00000600552 PNO1Q9NRX1 252 aaKnown RBP16.48■□□□□ 0.23
SHKBP1-223ENST00000600552 ZFATQ9P243 1243 aa16.48■□□□□ 0.23
SHKBP1-223ENST00000600552 KLF2Q9Y5W3 355 aaPredicted RBP16.48■□□□□ 0.23
SHKBP1-223ENST00000600552 PSAT1Q9Y617 370 aa16.48■□□□□ 0.23
SHKBP1-223ENST00000600552 PKDREJQ9NTG1 2253 aa16.48■□□□□ 0.23
SHKBP1-223ENST00000600552 URADA6NGE7 173 aa16.47■□□□□ 0.23
SHKBP1-223ENST00000600552 NCF1BA6NI72 391 aaPredicted RBP16.47■□□□□ 0.23
SHKBP1-223ENST00000600552 NCF1CA8MVU1 366 aaPredicted RBP16.47■□□□□ 0.23
SHKBP1-223ENST00000600552 ASNA1O43681 348 aa16.47■□□□□ 0.23
SHKBP1-223ENST00000600552 H2AFYO75367 372 aaKnown RBP16.47■□□□□ 0.23
SHKBP1-223ENST00000600552 SLC25A12O75746 678 aa16.47■□□□□ 0.23
SHKBP1-223ENST00000600552 NEURL1O76050 574 aa16.47■□□□□ 0.23
SHKBP1-223ENST00000600552 NCF1P14598 390 aaPredicted RBP16.47■□□□□ 0.23
SHKBP1-223ENST00000600552 AHRP35869 848 aa16.47■□□□□ 0.23
SHKBP1-223ENST00000600552 GDF5P43026 501 aa16.47■□□□□ 0.23
SHKBP1-223ENST00000600552 CYB561P49447 251 aa16.47■□□□□ 0.23
SHKBP1-223ENST00000600552 SMSP52788 366 aa16.47■□□□□ 0.23
SHKBP1-223ENST00000600552 ARL4CP56559 192 aa16.47■□□□□ 0.23
SHKBP1-223ENST00000600552 DR1Q01658 176 aa16.47■□□□□ 0.23
SHKBP1-223ENST00000600552 MORF4L2Q15014 288 aa16.47■□□□□ 0.23
SHKBP1-223ENST00000600552 ARMC2Q8NEN0 867 aa16.47■□□□□ 0.23
SHKBP1-223ENST00000600552 TRPV3Q8NET8 790 aa16.47■□□□□ 0.23
SHKBP1-223ENST00000600552 ELP5Q8TE02 316 aa16.47■□□□□ 0.23
SHKBP1-223ENST00000600552 FAR2Q96K12 515 aa16.47■□□□□ 0.23
SHKBP1-223ENST00000600552 FRMD6Q96NE9 622 aa16.47■□□□□ 0.23
SHKBP1-223ENST00000600552 PHF12Q96QT6 1004 aa16.47■□□□□ 0.23
SHKBP1-223ENST00000600552 PELI2Q9HAT8 420 aa16.47■□□□□ 0.23
SHKBP1-223ENST00000600552 CHST11Q9NPF2 352 aa16.47■□□□□ 0.23
SHKBP1-223ENST00000600552 CTNNAL1Q9UBT7 734 aa16.47■□□□□ 0.23
SHKBP1-223ENST00000600552 FBXW2Q9UKT8 454 aa16.47■□□□□ 0.23
SHKBP1-223ENST00000600552 CORO1CQ9ULV4 474 aaPredicted RBP16.47■□□□□ 0.23
SHKBP1-223ENST00000600552 KCNE2Q9Y6J6 123 aa16.47■□□□□ 0.23
SHKBP1-223ENST00000600552 FAM95CA0A1B0GW59 222 aa16.46■□□□□ 0.23
SHKBP1-223ENST00000600552 SAGE2PA6NJ88 616 aa16.46■□□□□ 0.23
SHKBP1-223ENST00000600552 PIAS1O75925 651 aa16.46■□□□□ 0.23
SHKBP1-223ENST00000600552 WDR47O94967 919 aa16.46■□□□□ 0.23
SHKBP1-223ENST00000600552 ZNF24P17028 368 aa16.46■□□□□ 0.23
SHKBP1-223ENST00000600552 IVDP26440 423 aa16.46■□□□□ 0.23
SHKBP1-223ENST00000600552 MGAT5Q09328 741 aa16.46■□□□□ 0.23
SHKBP1-223ENST00000600552 PDIA2Q13087 525 aaKnown RBP16.46■□□□□ 0.23
SHKBP1-223ENST00000600552 ZNF630Q2M218 657 aaPredicted RBP16.46■□□□□ 0.23
SHKBP1-223ENST00000600552 NIPAL1Q6NVV3 410 aa16.46■□□□□ 0.23
SHKBP1-223ENST00000600552 XKRXQ6PP77 449 aa16.46■□□□□ 0.23
SHKBP1-223ENST00000600552 GALNT7Q86SF2 657 aa16.46■□□□□ 0.23
SHKBP1-223ENST00000600552 CA13Q8N1Q1 262 aa16.46■□□□□ 0.23
SHKBP1-223ENST00000600552 NKAPQ8N5F7 415 aaKnown RBP16.46■□□□□ 0.23
SHKBP1-223ENST00000600552 TMEM125Q96AQ2 219 aa16.46■□□□□ 0.23
SHKBP1-223ENST00000600552 WDR83Q9BRX9 315 aaKnown RBP16.46■□□□□ 0.23
SHKBP1-223ENST00000600552 SARGQ9BW04 601 aa16.46■□□□□ 0.23
SHKBP1-223ENST00000600552 PRDM9Q9NQV7 894 aa16.46■□□□□ 0.23
SHKBP1-223ENST00000600552 PCDHGB6Q9Y5F9 930 aa16.46■□□□□ 0.23
SHKBP1-223ENST00000600552 TEX264Q9Y6I9 313 aa16.46■□□□□ 0.23
SHKBP1-223ENST00000600552 TRBV11-1A0A0K0K1C0 115 aa16.45■□□□□ 0.22
SHKBP1-223ENST00000600552 MYOCOSA0A1B0GUC4 107 aa16.45■□□□□ 0.22
SHKBP1-223ENST00000600552 C4orf51C9J302 202 aa16.45■□□□□ 0.22
SHKBP1-223ENST00000600552 CES2O00748 559 aa16.45■□□□□ 0.22
SHKBP1-223ENST00000600552 FCHO1O14526 889 aa16.45■□□□□ 0.22
SHKBP1-223ENST00000600552 CDC40O60508 579 aaKnown RBP eCLIP16.45■□□□□ 0.22
SHKBP1-223ENST00000600552 MYO1DO94832 1006 aa16.45■□□□□ 0.22
SHKBP1-223ENST00000600552 ZNF37AP17032 561 aaPredicted RBP16.45■□□□□ 0.22
SHKBP1-223ENST00000600552 TCP1P17987 556 aaKnown RBP16.45■□□□□ 0.22
SHKBP1-223ENST00000600552 MLF1P58340 268 aa16.45■□□□□ 0.22
SHKBP1-223ENST00000600552 TAS2R39P59534 338 aa16.45■□□□□ 0.22
SHKBP1-223ENST00000600552 TSNQ15631 228 aaKnown RBP16.45■□□□□ 0.22
SHKBP1-223ENST00000600552 FBXO48Q5FWF7 155 aa16.45■□□□□ 0.22
SHKBP1-223ENST00000600552 RNFT1Q5M7Z0 435 aa16.45■□□□□ 0.22
SHKBP1-223ENST00000600552 QSOX2Q6ZRP7 698 aa16.45■□□□□ 0.22
SHKBP1-223ENST00000600552 SPATA6LQ8N4H0 392 aa16.45■□□□□ 0.22
SHKBP1-223ENST00000600552 FBXO36Q8NEA4 188 aa16.45■□□□□ 0.22
SHKBP1-223ENST00000600552 ADAMTS18Q8TE60 1221 aa16.45■□□□□ 0.22
SHKBP1-223ENST00000600552 ANKRD49Q8WVL7 239 aa16.45■□□□□ 0.22
SHKBP1-223ENST00000600552 PDLIM5Q96HC4 596 aaKnown RBP16.45■□□□□ 0.22
SHKBP1-223ENST00000600552 PDLIM2Q96JY6 352 aa16.45■□□□□ 0.22
SHKBP1-223ENST00000600552 SLC6A16Q9GZN6 736 aa16.45■□□□□ 0.22
SHKBP1-223ENST00000600552 MEMO1Q9Y316 297 aa16.45■□□□□ 0.22
SHKBP1-223ENST00000600552 ASPDHA6ND91 283 aa16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 ERI3O43414 337 aaKnown RBP16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 NME2P1O60361 137 aa16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 SERPINA6P08185 405 aa16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 NME2P22392 152 aa16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 ELAVL4P26378 380 aaKnown RBP16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 PPP2R1BP30154 601 aa16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 PTGER1P34995 402 aa16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 MEOX1P50221 254 aa16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 HLCSP50747 726 aa16.44■□□□□ 0.22
SHKBP1-223ENST00000600552 SLC12A2P55011 1212 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms