RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 SIRT6Q8N6T7 355 aa13.18□□□□□ -0.3
SHKBP1-218ENST00000598907 OR11G2Q8NGC1 345 aa13.18□□□□□ -0.3
SHKBP1-218ENST00000598907 STAG3L4Q8TBR4 150 aa13.18□□□□□ -0.3
SHKBP1-218ENST00000598907 LCN9Q8WX39 176 aa13.18□□□□□ -0.3
SHKBP1-218ENST00000598907 TFGQ92734 400 aaPredicted RBP13.18□□□□□ -0.3
SHKBP1-218ENST00000598907 TSNARE1Q96NA8 513 aa13.18□□□□□ -0.3
SHKBP1-218ENST00000598907 MRPL46Q9H2W6 279 aaKnown RBP13.18□□□□□ -0.3
SHKBP1-218ENST00000598907 C12orf65Q9H3J6 166 aaKnown RBP13.18□□□□□ -0.3
SHKBP1-218ENST00000598907 ALG9Q9H6U8 611 aa13.18□□□□□ -0.3
SHKBP1-218ENST00000598907 SLC17A7Q9P2U7 560 aa13.18□□□□□ -0.3
SHKBP1-218ENST00000598907 PDE10AQ9Y233 779 aa13.18□□□□□ -0.3
SHKBP1-218ENST00000598907 OARD1Q9Y530 152 aa13.18□□□□□ -0.3
SHKBP1-218ENST00000598907 CSPG4Q6UVK1 2322 aa13.18□□□□□ -0.3
SHKBP1-218ENST00000598907 TMEM120BA0PK00 339 aa13.17□□□□□ -0.3
SHKBP1-218ENST00000598907 ARHGEF33A8MVX0 844 aa13.17□□□□□ -0.3
SHKBP1-218ENST00000598907 KLK8O60259 260 aa13.17□□□□□ -0.3
SHKBP1-218ENST00000598907 KERAO60938 352 aa13.17□□□□□ -0.3
SHKBP1-218ENST00000598907 ZWINTO95229 277 aa13.17□□□□□ -0.3
SHKBP1-218ENST00000598907 C8BP07358 591 aa13.17□□□□□ -0.3
SHKBP1-218ENST00000598907 DHRS4L1P0CG22 281 aa13.17□□□□□ -0.3
SHKBP1-218ENST00000598907 MTHFD2P13995 350 aa13.17□□□□□ -0.3
SHKBP1-218ENST00000598907 FOSL1P15407 271 aa13.17□□□□□ -0.3
SHKBP1-218ENST00000598907 ALAS2P22557 587 aa13.17□□□□□ -0.3
SHKBP1-218ENST00000598907 CDKL1Q00532 357 aa13.17□□□□□ -0.3
SHKBP1-218ENST00000598907 MYBPHQ13203 477 aa13.17□□□□□ -0.3
SHKBP1-218ENST00000598907 DSG2Q14126 1118 aa13.17□□□□□ -0.3
SHKBP1-218ENST00000598907 GRB7Q14451 532 aa13.17□□□□□ -0.3
SHKBP1-218ENST00000598907 PHKG1Q16816 387 aa13.17□□□□□ -0.3
SHKBP1-218ENST00000598907 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.17□□□□□ -0.3
SHKBP1-218ENST00000598907 UBE2R2Q712K3 238 aaPredicted RBP13.17□□□□□ -0.3
SHKBP1-218ENST00000598907 TBC1D21Q8IYX1 336 aa13.17□□□□□ -0.3
SHKBP1-218ENST00000598907 C19orf47Q8N9M1 422 aaKnown RBP13.17□□□□□ -0.3
SHKBP1-218ENST00000598907 PHC3Q8NDX5 983 aa13.17□□□□□ -0.3
SHKBP1-218ENST00000598907 OR5K2Q8NHB8 316 aa13.17□□□□□ -0.3
SHKBP1-218ENST00000598907 DNAJB8Q8NHS0 232 aa13.17□□□□□ -0.3
SHKBP1-218ENST00000598907 SPATA3Q8NHX4 192 aa13.17□□□□□ -0.3
SHKBP1-218ENST00000598907 BRIX1Q8TDN6 353 aaKnown RBP13.17□□□□□ -0.3
SHKBP1-218ENST00000598907 FOPNLQ96NB1 174 aa13.17□□□□□ -0.3
SHKBP1-218ENST00000598907 PARVBQ9HBI1 364 aa13.17□□□□□ -0.3
SHKBP1-218ENST00000598907 XPR1Q9UBH6 696 aa13.17□□□□□ -0.3
SHKBP1-218ENST00000598907 TSR3Q9UJK0 312 aaKnown RBP13.17□□□□□ -0.3
SHKBP1-218ENST00000598907 STAB1Q9NY15 2570 aa13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 FAM90A27PA6NNH2 459 aa13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 G3V2L1 256 aa13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 H3BMH7 237 aa13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 PRAMEF2O60811 474 aa13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 CATP04040 527 aaKnown RBP13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 TPBGLP0DKB5 382 aa13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 ADSLP30566 484 aaPredicted RBP13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 MEOX1P50221 254 aa13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 TGFBIQ15582 683 aa13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 CCSMST1Q4G0I0 132 aa13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 CDKL4Q5MAI5 379 aa13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 OR5AR1Q8NGP9 310 aa13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 CFAP61Q8NHU2 1237 aa13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 RDH11Q8TC12 318 aa13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 AGAP11Q8TF27 550 aa13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 NUDT8Q8WV74 236 aa13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 SKA2Q8WVK7 121 aaPredicted RBP13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 SCYL1Q96KG9 808 aa13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 FAM111AQ96PZ2 611 aa13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 SPSB2Q99619 263 aa13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 LIME1Q9H400 295 aa13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 MVB12BQ9H7P6 319 aa13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 KCNK9Q9NPC2 374 aa13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 NPDC1Q9NQX5 325 aaPredicted RBP13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 CTSFQ9UBX1 484 aa13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 RNF112Q9ULX5 631 aa13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 PPT2Q9UMR5 302 aa13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 ASF1AQ9Y294 204 aa13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 HEBP2Q9Y5Z4 205 aa13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 FN1P02751 2386 aaKnown RBP13.16□□□□□ -0.3
SHKBP1-218ENST00000598907 NKX2-6A6NCS4 301 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 SYCE1LA8MT33 242 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 MYO1CO00159 1063 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 RPN2P04844 631 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 ITGAXP20702 1163 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 NDUFS1P28331 727 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 HPDP32754 393 aaPredicted RBP13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 BDKRB1P46663 353 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 AP1S2P56377 157 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 WDR4P57081 412 aaKnown RBP13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 ZIC1Q15915 447 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 NKG7Q16617 165 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 CLEC9AQ6UXN8 241 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 GPSM1Q86YR5 675 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 SPPL2CQ8IUH8 684 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 DCUN1D3Q8IWE4 304 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 KBTBD2Q8IY47 623 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 METTL27Q8N6F8 245 aaPredicted RBP13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 PDPRQ8NCN5 879 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 SUN3Q8TAQ9 357 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 MAGEC3Q8TD91 643 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 MCOLN3Q8TDD5 553 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 NINJ1Q92982 152 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 FKBP10Q96AY3 582 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 RAD51AP1Q96B01 352 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 NACC2Q96BF6 587 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 C8orf44Q96CB5 159 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms