RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 SPNS1Q9H2V7 528 aa9.31□□□□□ -0.92
LIG1-209ENST00000596104 TP63Q9H3D4 680 aaPredicted RBP9.31□□□□□ -0.92
LIG1-209ENST00000596104 PARVBQ9HBI1 364 aa9.31□□□□□ -0.92
LIG1-209ENST00000596104 NECTIN3Q9NQS3 549 aa9.31□□□□□ -0.92
LIG1-209ENST00000596104 SAMD15Q9P1V8 674 aa9.31□□□□□ -0.92
LIG1-209ENST00000596104 KCNN3Q9UGI6 736 aa9.31□□□□□ -0.92
LIG1-209ENST00000596104 ZNF223Q9UK11 482 aaPredicted RBP9.31□□□□□ -0.92
LIG1-209ENST00000596104 GUCA1BQ9UMX6 200 aa9.31□□□□□ -0.92
LIG1-209ENST00000596104 SDR42E2A6NKP2 422 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 KLRC4-KLRK1H3BQV0 150 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 FCHO1O14526 889 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 SLC16A5O15375 505 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 CDC40O60508 579 aaKnown RBP eCLIP9.3□□□□□ -0.92
LIG1-209ENST00000596104 HOXD4P09016 255 aaPredicted RBP9.3□□□□□ -0.92
LIG1-209ENST00000596104 ZNF888P0CJ79 500 aaPredicted RBP9.3□□□□□ -0.92
LIG1-209ENST00000596104 SMIM10L1P0DMW3 83 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 HOXB4P17483 251 aaPredicted RBP9.3□□□□□ -0.92
LIG1-209ENST00000596104 DNAJA1P31689 397 aaKnown RBP9.3□□□□□ -0.92
LIG1-209ENST00000596104 SCTRP47872 440 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 RGS4P49798 205 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 GPR85P60893 370 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 SKP1P63208 163 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 SARNPP82979 210 aaKnown RBP9.3□□□□□ -0.92
LIG1-209ENST00000596104 GPS1Q13098 491 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 NIPAL1Q6NVV3 410 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 ARHGAP11AQ6P4F7 1023 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 PAQR3Q6TCH7 311 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 KIAA0408Q6ZU52 694 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 LMNTD2Q8IXW0 634 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 CYP4Z2PQ8N1L4 340 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 MCUQ8NE86 351 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 OR52N2Q8NGI0 321 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 OR56A3Q8NH54 315 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 MAIP1Q8WWC4 291 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 NRGNQ92686 78 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 RND1Q92730 232 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 PYCR2Q96C36 320 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 SNF8Q96H20 258 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 SMIM10Q96HG1 83 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 SEC16BQ96JE7 1060 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 SERPINB12Q96P63 405 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 NDNQ99608 321 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 ZNF559Q9BR84 538 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 SLC6A16Q9GZN6 736 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 CXXC4Q9H2H0 198 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 CLK4Q9HAZ1 481 aaKnown RBP9.3□□□□□ -0.92
LIG1-209ENST00000596104 KCNJ16Q9NPI9 418 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 PRDM9Q9NQV7 894 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 DEPPQ9NTK1 212 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 C20orf96Q9NUD7 363 aaPredicted RBP9.3□□□□□ -0.92
LIG1-209ENST00000596104 ZFATQ9P243 1243 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 TRMT6Q9UJA5 497 aaKnown RBP9.3□□□□□ -0.92
LIG1-209ENST00000596104 ZFP69BQ9UJL9 534 aa9.3□□□□□ -0.92
LIG1-209ENST00000596104 PPIEQ9UNP9 301 aaKnown RBP9.3□□□□□ -0.92
LIG1-209ENST00000596104 TRBV11-1A0A0K0K1C0 115 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 FAM221AA4D161 298 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 PINLYPA6NC86 204 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 A8MUA0 341 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 C4orf51C9J302 202 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 ITGA10O75578 1167 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 PDE9AO76083 593 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 SERPIND1P05546 499 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 RNH1P13489 461 aaKnown RBP9.29□□□□□ -0.92
LIG1-209ENST00000596104 GABRB3P28472 473 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 AHRP35869 848 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 CLCN2P51788 898 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 GPR143P51810 404 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 IST1P53990 364 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 NUP107P57740 925 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 RAB8AP61006 207 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 RGS1Q08116 209 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 PMPCAQ10713 525 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 HYAL2Q12891 473 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 HSP90AA5PQ58FG0 334 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 CATSPEREQ5SY80 951 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 DUPD1Q68J44 220 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 UGT3A1Q6NUS8 523 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 TTC27Q6P3X3 843 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 ABHD13Q7L211 337 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 TMEM200AQ86VY9 491 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 MYO1HQ8N1T3 1032 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 ANKRD53Q8N9V6 530 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 B3GNT7Q8NFL0 401 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 CALML6Q8TD86 181 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 SIGLEC10Q96LC7 697 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 AICDAQ9GZX7 198 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 RBSNQ9H1K0 784 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 ZDHHC11Q9H8X9 412 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 XAB2Q9HCS7 855 aaKnown RBP9.29□□□□□ -0.92
LIG1-209ENST00000596104 CLDN16Q9Y5I7 305 aa9.29□□□□□ -0.92
LIG1-209ENST00000596104 TMEM200CA6NKL6 621 aa9.28□□□□□ -0.92
LIG1-209ENST00000596104 USP27XA6NNY8 438 aa9.28□□□□□ -0.92
LIG1-209ENST00000596104 GOLGA8MH3BSY2 632 aa9.28□□□□□ -0.92
LIG1-209ENST00000596104 TGFBR3LH3BV60 316 aa9.28□□□□□ -0.92
LIG1-209ENST00000596104 PSMD12O00232 456 aaPredicted RBP9.28□□□□□ -0.92
LIG1-209ENST00000596104 KLK8O60259 260 aa9.28□□□□□ -0.92
LIG1-209ENST00000596104 PRKNO60260 465 aaPredicted RBP9.28□□□□□ -0.92
LIG1-209ENST00000596104 MYO1DO94832 1006 aa9.28□□□□□ -0.92
LIG1-209ENST00000596104 NADKO95544 446 aaPredicted RBP9.28□□□□□ -0.92
LIG1-209ENST00000596104 CD99P14209 185 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms