RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, human

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-208	ENST00000595726	HAT1	O14929	419 aa		12.84	□□□□□ -0.35
SHKBP1-208	ENST00000595726	NDUFS3	O75489	264 aa		12.84	□□□□□ -0.35
SHKBP1-208	ENST00000595726	IL1RN	P18510	177 aa		12.84	□□□□□ -0.35
SHKBP1-208	ENST00000595726	PAM	P19021	973 aa		12.84	□□□□□ -0.35
SHKBP1-208	ENST00000595726	UQCRC1	P31930	480 aa		12.84	□□□□□ -0.35
SHKBP1-208	ENST00000595726	RPA3	P35244	121 aa	Predicted RBP	12.84	□□□□□ -0.35
SHKBP1-208	ENST00000595726	OR4D2	P58180	307 aa		12.84	□□□□□ -0.35
SHKBP1-208	ENST00000595726	MLF1	P58340	268 aa		12.84	□□□□□ -0.35
SHKBP1-208	ENST00000595726	RHAG	Q02094	409 aa		12.84	□□□□□ -0.35
SHKBP1-208	ENST00000595726	PPP1R7	Q15435	360 aa		12.84	□□□□□ -0.35
SHKBP1-208	ENST00000595726	CTSL3P	Q5NE16	218 aa		12.84	□□□□□ -0.35
SHKBP1-208	ENST00000595726	PTRHD1	Q6GMV3	140 aa	Known RBP	12.84	□□□□□ -0.35
SHKBP1-208	ENST00000595726	MRNIP	Q6NTE8	343 aa		12.84	□□□□□ -0.35
SHKBP1-208	ENST00000595726	LRRC6	Q86X45	466 aa		12.84	□□□□□ -0.35
SHKBP1-208	ENST00000595726	VWA5B2	Q8N398	1253 aa		12.84	□□□□□ -0.35
SHKBP1-208	ENST00000595726	ZFP62	Q8NB50	900 aa	Predicted RBP	12.84	□□□□□ -0.35
SHKBP1-208	ENST00000595726	LPGAT1	Q92604	370 aa		12.84	□□□□□ -0.35
SHKBP1-208	ENST00000595726	ZNF669	Q96BR6	464 aa	Predicted RBP	12.84	□□□□□ -0.35
SHKBP1-208	ENST00000595726	NEUROD4	Q9HD90	331 aa		12.84	□□□□□ -0.35
SHKBP1-208	ENST00000595726	ASIC3	Q9UHC3	531 aa		12.84	□□□□□ -0.35
SHKBP1-208	ENST00000595726	TAC3	Q9UHF0	121 aa		12.84	□□□□□ -0.35
SHKBP1-208	ENST00000595726	SAR1B	Q9Y6B6	198 aa		12.84	□□□□□ -0.35
SHKBP1-208	ENST00000595726	ZCWPW2	A0A1B0GU75	182 aa		12.83	□□□□□ -0.36
SHKBP1-208	ENST00000595726	PINLYP	A6NC86	204 aa		12.83	□□□□□ -0.36
SHKBP1-208	ENST00000595726	SDR42E2	A6NKP2	422 aa		12.83	□□□□□ -0.36
SHKBP1-208	ENST00000595726	FAM166B	A8MTA8	275 aa		12.83	□□□□□ -0.36
SHKBP1-208	ENST00000595726	DNALI1	O14645	258 aa	Predicted RBP	12.83	□□□□□ -0.36
SHKBP1-208	ENST00000595726	NSA2	O95478	260 aa	Known RBP	12.83	□□□□□ -0.36
SHKBP1-208	ENST00000595726	C8B	P07358	591 aa		12.83	□□□□□ -0.36
SHKBP1-208	ENST00000595726	CYC1	P08574	325 aa		12.83	□□□□□ -0.36
SHKBP1-208	ENST00000595726	OGN	P20774	298 aa	Known RBP	12.83	□□□□□ -0.36
SHKBP1-208	ENST00000595726	TRHR	P34981	398 aa	Predicted RBP	12.83	□□□□□ -0.36
SHKBP1-208	ENST00000595726	BCL6	P41182	706 aa		12.83	□□□□□ -0.36
SHKBP1-208	ENST00000595726	EIF3B	P55884	814 aa	Known RBP	12.83	□□□□□ -0.36
SHKBP1-208	ENST00000595726	DHX34	Q14147	1143 aa	Known RBP	12.83	□□□□□ -0.36
SHKBP1-208	ENST00000595726	NDUFA9	Q16795	377 aa		12.83	□□□□□ -0.36
SHKBP1-208	ENST00000595726	ANKRD20A4	Q4UJ75	823 aa		12.83	□□□□□ -0.36
SHKBP1-208	ENST00000595726	RNF187	Q5TA31	235 aa	Predicted RBP	12.83	□□□□□ -0.36
SHKBP1-208	ENST00000595726	FBXW10	Q5XX13	1052 aa		12.83	□□□□□ -0.36
SHKBP1-208	ENST00000595726	B3GNT6	Q6ZMB0	384 aa		12.83	□□□□□ -0.36
SHKBP1-208	ENST00000595726	ADCK2	Q7Z695	626 aa		12.83	□□□□□ -0.36
SHKBP1-208	ENST00000595726	CYP4X1	Q8N118	509 aa		12.83	□□□□□ -0.36
SHKBP1-208	ENST00000595726	PPFIBP2	Q8ND30	876 aa		12.83	□□□□□ -0.36
SHKBP1-208	ENST00000595726	GSDMB	Q8TAX9	411 aa		12.83	□□□□□ -0.36
SHKBP1-208	ENST00000595726	BIRC8	Q96P09	236 aa		12.83	□□□□□ -0.36
SHKBP1-208	ENST00000595726	PANX3	Q96QZ0	392 aa		12.83	□□□□□ -0.36
SHKBP1-208	ENST00000595726	ATG10	Q9H0Y0	220 aa		12.83	□□□□□ -0.36
SHKBP1-208	ENST00000595726	DEPP	Q9NTK1	212 aa		12.83	□□□□□ -0.36
SHKBP1-208	ENST00000595726	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	12.83	□□□□□ -0.36
SHKBP1-208	ENST00000595726	SCN3A	Q9NY46	2000 aa		12.83	□□□□□ -0.36
SHKBP1-208	ENST00000595726	MAGEB16	A2A368	324 aa		12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	CTAGE9	A4FU28	777 aa		12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	FAM171A2	A8MVW0	826 aa		12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726		H7C1Q1	480 aa		12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	TXNDC9	O14530	226 aa		12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	SMAD7	O15105	426 aa	Known RBP	12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	DNAJB6	O75190	326 aa		12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	RDH16	O75452	317 aa		12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	PKM	P14618	531 aa	Known RBP	12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	EZR	P15311	586 aa	Known RBP	12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	ADAR	P55265	1226 aa	Known RBP	12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	PPIA	P62937	165 aa	Known RBP	12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	PRDX1	Q06830	199 aa	Known RBP	12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	NAA25	Q14CX7	972 aa		12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	TMED2	Q15363	201 aa		12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	FLYWCH1	Q4VC44	716 aa		12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	EEF1AKMT2	Q5JPI9	291 aa	Known RBP	12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	ICE2	Q659A1	982 aa		12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	CENPU	Q71F23	418 aa		12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	SDCCAG8	Q86SQ7	713 aa	Predicted RBP	12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	PDSS2	Q86YH6	399 aa		12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	CILP2	Q8IUL8	1156 aa		12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	PLPP5	Q8NEB5	264 aa		12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	SMPDL3A	Q92484	453 aa		12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	PEX11G	Q96HA9	241 aa		12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	COX4I2	Q96KJ9	171 aa		12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	SIGLEC10	Q96LC7	697 aa		12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	TCF12	Q99081	682 aa		12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	CNPPD1	Q9BV87	410 aa		12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	PLEKHF2	Q9H8W4	249 aa		12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	LANCL2	Q9NS86	450 aa		12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	SPATA7	Q9P0W8	599 aa		12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	LIPG	Q9Y5X9	500 aa		12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	MPDZ	O75970	2070 aa		12.82	□□□□□ -0.36
SHKBP1-208	ENST00000595726	HEATR5B	Q9P2D3	2071 aa		12.81	□□□□□ -0.36
SHKBP1-208	ENST00000595726	FEZF1	A0PJY2	475 aa		12.81	□□□□□ -0.36
SHKBP1-208	ENST00000595726	ZNF860	A6NHJ4	632 aa		12.81	□□□□□ -0.36
SHKBP1-208	ENST00000595726	SYT5	O00445	386 aa		12.81	□□□□□ -0.36
SHKBP1-208	ENST00000595726	PFDN6	O15212	129 aa		12.81	□□□□□ -0.36
SHKBP1-208	ENST00000595726	NIPSNAP2	O75323	286 aa		12.81	□□□□□ -0.36
SHKBP1-208	ENST00000595726	CD53	P19397	219 aa		12.81	□□□□□ -0.36
SHKBP1-208	ENST00000595726	IVD	P26440	423 aa		12.81	□□□□□ -0.36
SHKBP1-208	ENST00000595726	FMO4	P31512	558 aa		12.81	□□□□□ -0.36
SHKBP1-208	ENST00000595726	CCNF	P41002	786 aa		12.81	□□□□□ -0.36
SHKBP1-208	ENST00000595726	DCAF7	P61962	342 aa		12.81	□□□□□ -0.36
SHKBP1-208	ENST00000595726	PCBP2	Q15366	365 aa	Known RBP eCLIP	12.81	□□□□□ -0.36	6e-9	■■■■■ 40.7
SHKBP1-208	ENST00000595726	SLC25A35	Q3KQZ1	300 aa		12.81	□□□□□ -0.36
SHKBP1-208	ENST00000595726	ZNF470	Q6ECI4	717 aa		12.81	□□□□□ -0.36
SHKBP1-208	ENST00000595726	NEPRO	Q6NW34	567 aa		12.81	□□□□□ -0.36
SHKBP1-208	ENST00000595726	OTOA	Q7RTW8	1153 aa		12.81	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms