RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 RASGEF1CQ8N431 466 aa13.09□□□□□ -0.31
VMP1-209ENST00000588915 NAT8LQ8N9F0 302 aa13.09□□□□□ -0.31
VMP1-209ENST00000588915 TRPV3Q8NET8 790 aa13.09□□□□□ -0.31
VMP1-209ENST00000588915 MAGOHBQ96A72 148 aaKnown RBP13.09□□□□□ -0.31
VMP1-209ENST00000588915 FBXL8Q96CD0 374 aa13.09□□□□□ -0.31
VMP1-209ENST00000588915 SMIM10Q96HG1 83 aa13.09□□□□□ -0.31
VMP1-209ENST00000588915 RBCK1Q9BYM8 510 aa13.09□□□□□ -0.31
VMP1-209ENST00000588915 DEFB126Q9BYW3 111 aa13.09□□□□□ -0.31
VMP1-209ENST00000588915 PLSCR2Q9NRY7 297 aa13.09□□□□□ -0.31
VMP1-209ENST00000588915 IARS2Q9NSE4 1012 aaKnown RBP13.09□□□□□ -0.31
VMP1-209ENST00000588915 ARL15Q9NXU5 204 aa13.09□□□□□ -0.31
VMP1-209ENST00000588915 NEU2Q9Y3R4 380 aa13.09□□□□□ -0.31
VMP1-209ENST00000588915 MED13LQ71F56 2210 aa13.08□□□□□ -0.32
VMP1-209ENST00000588915 IGKV3D-11A0A0A0MRZ8 115 aa13.08□□□□□ -0.32
VMP1-209ENST00000588915 SYNDIG1LA6NDD5 238 aa13.08□□□□□ -0.32
VMP1-209ENST00000588915 GOLGA8MH3BSY2 632 aa13.08□□□□□ -0.32
VMP1-209ENST00000588915 PSMD12O00232 456 aaPredicted RBP13.08□□□□□ -0.32
VMP1-209ENST00000588915 B4GALT2O60909 372 aa13.08□□□□□ -0.32
VMP1-209ENST00000588915 IGFBP2P18065 325 aa13.08□□□□□ -0.32
VMP1-209ENST00000588915 PGAM1P18669 254 aa13.08□□□□□ -0.32
VMP1-209ENST00000588915 CXCR5P32302 372 aa13.08□□□□□ -0.32
VMP1-209ENST00000588915 ST13P50502 369 aaKnown RBP13.08□□□□□ -0.32
VMP1-209ENST00000588915 KRTAP10-9P60411 292 aa13.08□□□□□ -0.32
VMP1-209ENST00000588915 HSF1Q00613 529 aa13.08□□□□□ -0.32
VMP1-209ENST00000588915 CSHL1Q14406 222 aa13.08□□□□□ -0.32
VMP1-209ENST00000588915 CYP1B1Q16678 543 aa13.08□□□□□ -0.32
VMP1-209ENST00000588915 TTC27Q6P3X3 843 aa13.08□□□□□ -0.32
VMP1-209ENST00000588915 FGD2Q7Z6J4 655 aa13.08□□□□□ -0.32
VMP1-209ENST00000588915 SPNS2Q8IVW8 549 aa13.08□□□□□ -0.32
VMP1-209ENST00000588915 SULF2Q8IWU5 870 aa13.08□□□□□ -0.32
VMP1-209ENST00000588915 CNTN4Q8IWV2 1026 aa13.08□□□□□ -0.32
VMP1-209ENST00000588915 CYP4X1Q8N118 509 aa13.08□□□□□ -0.32
VMP1-209ENST00000588915 ZFP62Q8NB50 900 aaPredicted RBP13.08□□□□□ -0.32
VMP1-209ENST00000588915 B3GNT7Q8NFL0 401 aa13.08□□□□□ -0.32
VMP1-209ENST00000588915 LILRB4Q8NHJ6 448 aa13.08□□□□□ -0.32
VMP1-209ENST00000588915 UTP15Q8TED0 518 aaKnown RBP13.08□□□□□ -0.32
VMP1-209ENST00000588915 SLC5A11Q8WWX8 675 aa13.08□□□□□ -0.32
VMP1-209ENST00000588915 LINGO1Q96FE5 620 aa13.08□□□□□ -0.32
VMP1-209ENST00000588915 PDLIM5Q96HC4 596 aaKnown RBP13.08□□□□□ -0.32
VMP1-209ENST00000588915 OR4K3Q96R72 315 aa13.08□□□□□ -0.32
VMP1-209ENST00000588915 NDNQ99608 321 aa13.08□□□□□ -0.32
VMP1-209ENST00000588915 NAT9Q9BTE0 207 aa13.08□□□□□ -0.32
VMP1-209ENST00000588915 SLC6A16Q9GZN6 736 aa13.08□□□□□ -0.32
VMP1-209ENST00000588915 LZTFL1Q9NQ48 299 aa13.08□□□□□ -0.32
VMP1-209ENST00000588915 CORO1CQ9ULV4 474 aaPredicted RBP13.08□□□□□ -0.32
VMP1-209ENST00000588915 PPIEQ9UNP9 301 aaKnown RBP13.08□□□□□ -0.32
VMP1-209ENST00000588915 MMACHCQ9Y4U1 282 aa13.08□□□□□ -0.32
VMP1-209ENST00000588915 ZFHX3Q15911 3703 aa13.08□□□□□ -0.32
VMP1-209ENST00000588915 A0A1B0GTH9 108 aa13.07□□□□□ -0.32
VMP1-209ENST00000588915 TFECO14948 347 aaPredicted RBP13.07□□□□□ -0.32
VMP1-209ENST00000588915 DNAJB6O75190 326 aa13.07□□□□□ -0.32
VMP1-209ENST00000588915 AHSGP02765 367 aa13.07□□□□□ -0.32
VMP1-209ENST00000588915 SERPIND1P05546 499 aa13.07□□□□□ -0.32
VMP1-209ENST00000588915 SERPINA6P08185 405 aa13.07□□□□□ -0.32
VMP1-209ENST00000588915 ZNF888P0CJ79 500 aaPredicted RBP13.07□□□□□ -0.32
VMP1-209ENST00000588915 TFEBP19484 476 aa13.07□□□□□ -0.32
VMP1-209ENST00000588915 GABRB3P28472 473 aa13.07□□□□□ -0.32
VMP1-209ENST00000588915 MEOX1P50221 254 aa13.07□□□□□ -0.32
VMP1-209ENST00000588915 CLCN2P51788 898 aa13.07□□□□□ -0.32
VMP1-209ENST00000588915 OLR1P78380 273 aa13.07□□□□□ -0.32
VMP1-209ENST00000588915 BTG2P78543 158 aa13.07□□□□□ -0.32
VMP1-209ENST00000588915 CRYMQ14894 314 aa13.07□□□□□ -0.32
VMP1-209ENST00000588915 KRTAP21-3Q3LHN1 58 aa13.07□□□□□ -0.32
VMP1-209ENST00000588915 SPANXN3Q5MJ09 141 aa13.07□□□□□ -0.32
VMP1-209ENST00000588915 ARHGAP11AQ6P4F7 1023 aa13.07□□□□□ -0.32
VMP1-209ENST00000588915 CCDC137Q6PK04 289 aaKnown RBP13.07□□□□□ -0.32
VMP1-209ENST00000588915 PAOXQ6QHF9 649 aa13.07□□□□□ -0.32
VMP1-209ENST00000588915 NCCRP1Q6ZVX7 275 aaPredicted RBP13.07□□□□□ -0.32
VMP1-209ENST00000588915 PPIL6Q8IXY8 311 aa13.07□□□□□ -0.32
VMP1-209ENST00000588915 AGGF1Q8N302 714 aaeCLIP13.07□□□□□ -0.32
VMP1-209ENST00000588915 APCDD1LQ8NCL9 501 aa13.07□□□□□ -0.32
VMP1-209ENST00000588915 NEIL2Q969S2 332 aa13.07□□□□□ -0.32
VMP1-209ENST00000588915 PYCR2Q96C36 320 aa13.07□□□□□ -0.32
VMP1-209ENST00000588915 PBKQ96KB5 322 aa13.07□□□□□ -0.32
VMP1-209ENST00000588915 NAP1L3Q99457 506 aaPredicted RBP13.07□□□□□ -0.32
VMP1-209ENST00000588915 AIF1LQ9BQI0 150 aa13.07□□□□□ -0.32
VMP1-209ENST00000588915 TP63Q9H3D4 680 aaPredicted RBP13.07□□□□□ -0.32
VMP1-209ENST00000588915 PELI2Q9HAT8 420 aa13.07□□□□□ -0.32
VMP1-209ENST00000588915 SLC24A3Q9HC58 644 aa13.07□□□□□ -0.32
VMP1-209ENST00000588915 ZFATQ9P243 1243 aa13.07□□□□□ -0.32
VMP1-209ENST00000588915 SETD2Q9BYW2 2564 aaPredicted RBP13.07□□□□□ -0.32
VMP1-209ENST00000588915 USP27XA6NNY8 438 aa13.06□□□□□ -0.32
VMP1-209ENST00000588915 PEX1O43933 1283 aa13.06□□□□□ -0.32
VMP1-209ENST00000588915 TPOP07202 933 aa13.06□□□□□ -0.32
VMP1-209ENST00000588915 CHRNB4P30926 498 aa13.06□□□□□ -0.32
VMP1-209ENST00000588915 PTGER1P34995 402 aa13.06□□□□□ -0.32
VMP1-209ENST00000588915 CDKN2DP55273 166 aa13.06□□□□□ -0.32
VMP1-209ENST00000588915 REEP5Q00765 189 aa13.06□□□□□ -0.32
VMP1-209ENST00000588915 PDAP1Q13442 181 aaKnown RBP13.06□□□□□ -0.32
VMP1-209ENST00000588915 CATSPEREQ5SY80 951 aa13.06□□□□□ -0.32
VMP1-209ENST00000588915 C3P1Q6ZMU1 363 aa13.06□□□□□ -0.32
VMP1-209ENST00000588915 RGS9BPQ6ZS82 235 aa13.06□□□□□ -0.32
VMP1-209ENST00000588915 CD163Q86VB7 1156 aa13.06□□□□□ -0.32
VMP1-209ENST00000588915 GAS2L3Q86XJ1 694 aa13.06□□□□□ -0.32
VMP1-209ENST00000588915 GPALPP1Q8IXQ4 340 aa13.06□□□□□ -0.32
VMP1-209ENST00000588915 TMEM156Q8N614 296 aa13.06□□□□□ -0.32
VMP1-209ENST00000588915 GRK7Q8WTQ7 553 aa13.06□□□□□ -0.32
VMP1-209ENST00000588915 ANKRD7Q92527 254 aa13.06□□□□□ -0.32
VMP1-209ENST00000588915 NPLQ9BXD5 320 aaPredicted RBP13.06□□□□□ -0.32
VMP1-209ENST00000588915 TIMMDC1Q9NPL8 285 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms