RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	MYO1C	O00159	1063 aa		10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	CHST10	O43529	356 aa		10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	PRKN	O60260	465 aa	Predicted RBP	10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	LCMT2	O60294	686 aa	Known RBP	10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	OR6B1	O95007	311 aa		10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	GYPC	P04921	128 aa		10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	NID1	P14543	1247 aa		10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	COIL	P38432	576 aa	Predicted RBP	10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	SSR4	P51571	173 aa		10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	AGFG1	P52594	562 aa	Known RBP	10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	ABAT	P80404	500 aa		10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	PARP6	Q2NL67	630 aa		10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	ZNF750	Q32MQ0	723 aa		10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	TSTD2	Q5T7W7	516 aa		10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	THEMIS2	Q5TEJ8	643 aa		10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	NDUFAF5	Q5TEU4	345 aa		10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	PRSS57	Q6UWY2	283 aa		10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	RHOT2	Q8IXI1	618 aa		10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	FAM109A	Q8N4B1	249 aa		10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	KRT35	Q92764	455 aa		10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	SARAF	Q96BY9	339 aa		10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	LRRC46	Q96FV0	321 aa		10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	PERP	Q96FX8	193 aa		10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	PANX3	Q96QZ0	392 aa		10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	EBNA1BP2	Q99848	306 aa	Known RBP	10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	EXO5	Q9H790	373 aa		10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	NECTIN3	Q9NQS3	549 aa		10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	LMBRD1	Q9NUN5	540 aa		10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	HPF1	Q9NWY4	346 aa		10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	GALP	Q9UBC7	116 aa		10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	MTRF1L	Q9UGC7	380 aa	Known RBP	10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	PCDHA3	Q9Y5H8	950 aa		10.9	□□□□□ -0.66
CLK3-222	ENST00000568232	KCNE1B	A0A087WTH5	132 aa		10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	MBD3L4	A6NDZ8	208 aa	Predicted RBP	10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	MBD3L5	A6NJ08	208 aa	Predicted RBP	10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	KPNA5	O15131	536 aa		10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	WIPF1	O43516	503 aa		10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	SUSD5	O60279	629 aa		10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	KIF5C	O60282	957 aa		10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	OR2J2	O76002	312 aa		10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	GABRA1	P14867	456 aa		10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	IL10	P22301	178 aa		10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	PPARG	P37231	505 aa	Predicted RBP	10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	CLCN2	P51788	898 aa		10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	RPS15A	P62244	130 aa	Known RBP	10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	ACVR1	Q04771	509 aa		10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	KRTAP1-1	Q07627	177 aa		10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	SLC10A1	Q14973	349 aa		10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	ARHGAP19	Q14CB8	494 aa		10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	CTSL3P	Q5NE16	218 aa		10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	CATSPERE	Q5SY80	951 aa		10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	LRRC56	Q8IYG6	542 aa	Predicted RBP	10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	ULK2	Q8IYT8	1036 aa		10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	FBXO15	Q8NCQ5	510 aa	Predicted RBP	10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	SLC13A3	Q8WWT9	602 aa		10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	TMEM158	Q8WZ71	300 aa		10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	PRR14	Q9BWN1	585 aa		10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	EPB41L4B	Q9H329	900 aa		10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	SEMA4B	Q9NPR2	832 aa	Predicted RBP	10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	SPTLC3	Q9NUV7	552 aa		10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	TMEM184C	Q9NVA4	438 aa		10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	FOXD3	Q9UJU5	478 aa	Predicted RBP	10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	ANAPC5	Q9UJX4	755 aa		10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	SH2B3	Q9UQQ2	575 aa		10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	YARS2	Q9Y2Z4	477 aa	Known RBP	10.89	□□□□□ -0.67
CLK3-222	ENST00000568232	TRGV5	A0A0B4J1U4	118 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	TCRBV16S1A1N1	A0A5B0	115 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	RNF223	E7ERA6	249 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	NIPSNAP2	O75323	286 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	PSIP1	O75475	530 aa	Known RBP	10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	MYO1D	O94832	1006 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	CNOT4	O95628	575 aa	Known RBP	10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	SYF2	O95926	243 aa	Known RBP	10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	BMP7	P18075	431 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	CNR1	P21554	472 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	JAK1	P23458	1154 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	CEACAM8	P31997	349 aa	Predicted RBP	10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	SOX3	P41225	446 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	GRIA1	P42261	906 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	DNASE1L1	P49184	302 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	ZNF136	P52737	540 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	EIF3B	P55884	814 aa	Known RBP	10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	PRAME	P78395	509 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	FOXO1	Q12778	655 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	GBX1	Q14549	363 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	KCNJ11	Q14654	390 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	DEFB134	Q4QY38	66 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	ACSBG2	Q5FVE4	666 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	MEI1	Q5TIA1	1274 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	GK5	Q6ZS86	529 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	ASPG	Q86U10	573 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	KIF18B	Q86Y91	864 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	FAM71D	Q8N9W8	422 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	CAMKV	Q8NCB2	501 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	ZNF740	Q8NDX6	193 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	B3GNT7	Q8NFL0	401 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	ASB15	Q8WXK1	588 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	MRFAP1L1	Q96HT8	127 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	PIP5K1A	Q99755	562 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	FAM173A	Q9BQD7	235 aa		10.88	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms